Chr:
Chr8
Start:
18629272
End:
18629292
Strand:
-
Sequence:
UGAACAAUUGGCAUCUAUGAU
Length:
21
precursor sequence:
CCAAACUCCAAAACAUUUUUAAUGGAUUUGCCAAUGUGUUCAUCAAGGGGGAGAUUGUAAGAUCAAAGUGUGUUUUGAUUCUUAUUCUGUGAUGAACAAUUGGCAUCUAUGAUUAUUGGUUUUGAUAUUGGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
209
NEP:
76.28%
LE_num:
LEP:
8.76%
ME_num:
MEP:
9.12%
HE_num:
HEP:
5.84%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pollen
Tau :
0.97
Avg Expression:
47.88
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17 | -2.54530570016669 | 4.49626594758621e-12 |
| 2 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -1.73478264029873 | 1.6871178913523e-06 |