Chr:
Chr8
Start:
26814007
End:
26814027
Strand:
+
Sequence:
AGGCAGUCUCCUUGGCUAGCC
Length:
21
precursor sequence:
UAGCCAAGGAUGACUUGCCUGUAUAUUUAUAUAUAUAUGUGUGUGUGAUCAAUGGAUGGAUUGAUCAAGCUGCUUGCAGGCUCAUGCAUAUAUAUGUACAGGCAGUCUCCUUGGCUAGCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
39
NEP:
14.23%
LE_num:
LEP:
11.31%
ME_num:
MEP:
35.4%
HE_num:
HEP:
39.05%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf_sheath
Tau :
0.84
Avg Expression:
118.75
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(2) | -2.71267620752022 | 0.0028494211523732 |
| 2 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(1) | -1.43485073872195 | 0.0148893201191373 |
| 3 | HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 24h | 2.40967350508237 | 0.0235935401998027 |
| 4 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -3.45318156527689 | 2.57966184655681e-34 |
| 5 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -4.47752719315733 | 1.89049115869637e-37 |
| 6 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_24h | 3.65519972722411 | 0.00429681844371895 |
| 7 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | -1.02206819174568 | 0.000111827771967369 |
| 8 | none // leaves // WT, Control--/--none // leaves // DCL1a mutant, Control | 1.99866015372327 | 0.0185344615457285 |
| 9 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -1.12088818777631 | 0.0428610019866906 |