Chr:
Chr8
Start:
26803136
End:
26803157
Strand:
+
Sequence:
UGGUGAUAAGGGUGUAGCUCUG
Length:
22
precursor sequence:
GGAAGAGAGCAAGGCUUGCAUGGUGAUAAGGGUGUAGCUCUGGUAGCCAAGGAUGACUUGCCUGUGUCCUUGUGUAGAGGAUCAUUCAGAAAAUGAGCCUUGAACUGGUUCAUAGGCAGUCUCCUUGGCUAGUCUGAGUCGCUCUUAUCACUCAUGUUAGGCUUGCAUCUCGUUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
69
NEP:
25.18%
LE_num:
LEP:
13.14%
ME_num:
MEP:
48.18%
HE_num:
HEP:
13.5%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf_sheath
Tau :
0.92
Avg Expression:
55.23
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -4.88798427595268 | 4.14281225611694e-06 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -5.36027620451338 | 1.17286895106923e-05 |
| 3 | glyphosate-tolerant variety // leaves // CK--/--glyphosate-tolerant variety // leaves // Glyphosate | -3.01766070633362 | 0.00102506496321735 |
| 4 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | 1.22694128792333 | 0.0108611897407836 |
| 5 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_8h | 1.51769663904824 | 0.000230381794918029 |
| 6 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_24h | 5.13212655219556 | 6.99849966417168e-06 |
| 7 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h | 5.14990231883462 | 1.05955713731815e-05 |
| 8 | Nipponbare // leaf_sheath // S_bph feeding--/--BPH6-transgenic line // leaf_sheath // R_bph | 1.16522613338439 | 1.05127585129748e-10 |
| 9 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | 1.29169121970539 | 6.71146752548681e-12 |
| 10 | Nipponbare // leaves // rice_mock--/--Nipponbare // leaves // rice_RSV | -1.93586175827858 | 0.0310622175711587 |