RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miR171c_Both

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr4

Start:

31713482

End:

31713502

Strand:

-

Sequence:

UGAUUGAGCCGUGCCAAUAUC

Length:

21

precursor sequence:

CUCUCUAUGUGGGAACGGGAUAUUGGUGCGGUUCAAUCAGAAAGCUUGUGCUCCGAAGGCGAGGGGCUCCACUCUUUGAUUGAGCCGUGCCAAUAUCACGUCGCCUUUGCAGCUGCU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

0

NEP:

0.0%

LE_num:

0

LEP:

0.0%

ME_num:

43

MEP:

15.69%

HE_num:

231

HEP:

84.31%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

blade

Tau :

0.83

Avg Expression:

3111.29

Tip: Osa-miR171c_Both is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h-1.34334387970410.0143212997756174