Chr:
Chr4
Start:
8303664
End:
8303684
Strand:
-
Sequence:
UGCAUUUGCACCUGCACCUAC
Length:
21
precursor sequence:
CAAGUGAUGUGUGAUAGAGCUGCAUUUGCACCUGCACCUACAGAGAGGAAGAUGAAGCAGCAAGCUAGCAAUACGUGCUUGAUCGCUAUACGCUAGCUUCUUGCACACAAUGUUGUUCCUGGUCUCUUCCUGAUCCCUAGGUGCAGAGGCAGAUGCAACUAUGUCAUAGACUUCACAUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
83
NEP:
30.29%
LE_num:
LEP:
10.58%
ME_num:
MEP:
25.55%
HE_num:
HEP:
33.58%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.96
Avg Expression:
1075.07
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -3.02198943337985 | 5.2129700952449e-07 |
| 2 | Nipponbare // leaf_sheath // S_bph feeding--/--BPH6-transgenic line // leaf_sheath // R_bph | 1.61503105518929 | 5.28445585047596e-28 |
| 3 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | 1.13056660018976 | 2.28322875966888e-09 |
| 4 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | -1.49882223218005 | 4.64678348809516e-14 |