Chr:
Chr4
Start:
24406002
End:
24406022
Strand:
+
Sequence:
UCGAUAAGCCUCUGCAUCCAG
Length:
21
precursor sequence:
GAUUUGUUUGGGUGAUGCCUGGGCGCAGUGGUUUAUCGAUCUCUUCCCUGCCUUGUGCUGCUCCGAUCGAUGCCCGUGCUGAUUCUUGAUAAUAUACAACGCAGGAAUCGAUCGAUAAGCCUCUGCAUCCAGAUCUCACUUUUUGUUUAUGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
0
NEP:
0.0%
LE_num:
LEP:
1.46%
ME_num:
MEP:
40.51%
HE_num:
HEP:
58.03%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.77
Avg Expression:
217.72
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(2) | -1.06879726249005 | 0.0254542315716702 |
| 2 | HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 24h | -1.65754561936053 | 0.0254089633438334 |
| 3 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -1.20871304999779 | 1.55971424456368e-09 |