Chr:
Chr4
Start:
28585254
End:
28585279
Strand:
-
Sequence:
UUGCAUCCUCUGCACUUUGGGCCU
Length:
24
precursor sequence:
GGUUUAAUGUAUCAUCCGAUGUCCAAAGUGCAGAUGACGCAGCUUGGGUGCUGAUGUGGCAAUCCACGGUGGUGAGAAUUUUGCAUUUAGCCCCCUCAUGCUACAGUAUGCCUUCAAGUCUACUCCCACCACUCCCAAAUCUUUUGGUGCAUGGCUUAAACUAUGAAUUUGCUGGAUGCUGAGAAAUGCAUAUUUGUUGAUUUGGGGUGGUAGGAGUCGAUUUCGGGGCAUACUAUAGUGAAGAGGCGUAAGUGCAAAAUUCUCGUCACUGUGGACAAGCCUGAGUUGCAUCCUCUGCACUUUGGGCCUCGAGUGAUACAUUAAACCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
83
NEP:
30.29%
LE_num:
LEP:
9.85%
ME_num:
MEP:
39.42%
HE_num:
HEP:
20.44%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.86
Avg Expression:
48.51
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | none // leaves // WT, Control--/--none // leaves // DCL1a mutant, Control | -1.80828709720267 | 0.0316131712949105 |
| 2 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -2.22598634683339 | 1.64102669052102e-10 |
| 3 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -1.6167713368069 | 0.000344695433887626 |