| SRR1061625 | panicle | Heat Stress | 27.45 | HC |
| SRR1061624 | panicle | Normal | 71.68 | HC |
| SRR1612403 | leaf | WT wild type (miRNA) | 37.07 | HC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 77.82 | HC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 253.20 | HC |
| SRR6498701 | leaf | "WT, Control" | 258.04 | HC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 177.53 | HC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 236.67 | HC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 90.52 | HC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 72.42 | HC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 102.80 | HC |
| SRR1742988 | endosperm | 4X_En_sRNA | 13.28 | HC |
| SRR1742989 | endosperm | 4X_En_sRNA | 35.12 | HC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 20.33 | HC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 29.48 | HC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 41.42 | HC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 14.96 | HC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 28.93 | HC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 90.76 | HC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 36.76 | HC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 64.52 | HC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 74.88 | HC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 59.85 | HC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 22.97 | HC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 5.18 | HC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 4.41 | HC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 3.92 | HC |
| SRR1742993 | endosperm | 2X4_En_sRNA | 2.85 | HC |
| SRR1742992 | endosperm | 2X4_En_sRNA | 6.36 | HC |
| SRR1742991 | endosperm | 2X4_En_sRNA | 4.36 | HC |
| SRR1742990 | endosperm | 4X_En_sRNA | 24.24 | HC |
| SRR8649147 | panicle | panicle tissue | 120.81 | HC |
| SRR10704059 | leaf | Glyphosate | 33.36 | HC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 22.24 | HC |
| SRR6498699 | leaf | "WT, Control" | 263.52 | HC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 54.52 | HC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 74.75 | HC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 61.63 | HC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 7.28 | HC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 6.55 | HC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 12.36 | HC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 24.65 | HC |
| SRR1061612 | panicle | Normal | 32.68 | HC |
| SRR1061613 | panicle | Heat Stress | 27.40 | HC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 53.07 | HC |
| SRR1061618 | flag_leaf | Normal | 278.82 | HC |
| SRR1061619 | flag_leaf | Heat Stress | 254.84 | HC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 58.57 | HC |
| SRR2544788 | embryo | 24 hours imbibition | 13.47 | HC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 56.75 | HC |
| SRR2544787 | embryo | 12 hours imbibition | 17.46 | HC |
| SRR2544786 | embryo | dry seed | 9.18 | HC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 69.73 | HC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 54.84 | HC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 142.16 | HC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 13.49 | HC |