Chr:
Chr4
Start:
21661532
End:
21661555
Strand:
-
Sequence:
UUCCCGAUGCCUCCCAUUCCUA
Length:
22
precursor sequence:
GAGAGAGCCUAAGAGCAGUGGGAAUGGGAACAUGGAGGAAAGCCUAAAAACCAAAUUUCUUCCUCCAGCAAUGGAGGUGGAAAUUUGGUUUGGUUUUUUCCCGAUGCCUCCCAUUCCUAUCGUUCUUAAGCACUUCUUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
61
NEP:
22.26%
LE_num:
LEP:
18.25%
ME_num:
MEP:
33.94%
HE_num:
HEP:
25.55%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pollen
Tau :
0.91
Avg Expression:
316.62
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(2) | -1.47547467237796 | 0.00194038570814342 |
| 2 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | 1.3380096251035 | 0.00560753141155184 |
| 3 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -1.91653991737753 | 2.17283267678847e-08 |
| 4 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h | -2.17082410485073 | 2.26461606306327e-06 |