Chr:
Chr4
Start:
25026402
End:
25026421
Strand:
-
Sequence:
UGACAGAAGAGAGUGAGCAC
Length:
20
precursor sequence:
GGCGGGCCGGUGGCGCGAGGUGACAGAAGAGAGUGAGCACACGGCCGGGCGUGACGGCACCGGCGGGCGUGCCGUCGCGGCCGCGUGCUCACUGCUCUUUCUGUCAUCCGGUGCCGGCCGUUUUCUCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
0
NEP:
0.0%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
6.57%
HE_num:
HEP:
93.43%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.93
Avg Expression:
37332.61
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(2) | 1.96119473205471 | 1.75649897942299e-39 |
| 2 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(1) | 2.24653369310934 | 1.87186937798291e-85 |
| 3 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | 3.56610040734244 | 1.61591353075496e-100 |
| 4 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | 3.75395485576763 | 8.03845664413309e-41 |
| 5 | glyphosate-tolerant variety // leaves // CK--/--glyphosate-tolerant variety // leaves // Glyphosate | 1.88788118523804 | 0.0178200174999434 |
| 6 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | 1.2903951066617 | 2.68384027984136e-11 |
| 7 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | 1.22457365077836 | 1.16115403987107e-19 |