RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

osa-miR393b-3p_miRbase

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr4

Start:

34931885

End:

34931905

Strand:

-

Sequence:

UCAGUGCAAUCCCUUUGGAAU

Length:

21

precursor sequence:

UCGGCCUGAGGAAACUAGUGGAGGACUCCAAAGGGAUCGCAUUGAUCUGGCUAGCUAUCUCGAUCGAUCGCCUCAUCGAUCGACGACGACGUGCGUGAUCGAUCAGUGCAAUCCCUUUGGAAUUUUCCUCUU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

18

NEP:

6.57%

LE_num:

5

LEP:

1.82%

ME_num:

115

MEP:

41.97%

HE_num:

136

HEP:

49.64%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

leaf_sheath

Tau :

0.92

Avg Expression:

717.98

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 24h2.367323212963110.000476343594513471