Chr:
Chr4
Start:
28873196
End:
28873216
Strand:
+
Sequence:
UGCCAAAGGAGAGUUGCCCUA
Length:
21
precursor sequence:
AGUCCAGUUUCAGGGCUCCUCUCUCUUGGCAGGGAGCAUGUGAAGUCUUUUGUAGCUCACUCAUUUUCAGCCCUCUGCCAAAGGAGAGUUGCCCUAAAACUGGACU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
30
NEP:
10.95%
LE_num:
LEP:
9.12%
ME_num:
MEP:
48.54%
HE_num:
HEP:
31.39%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
spikelet
Tau :
0.83
Avg Expression:
63.68
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -7.04563859991461 | 1.30828489498761e-173 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -7.68041139929219 | 2.72238972270087e-163 |
| 3 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | -1.06292577490862 | 0.00150023485006018 |
| 4 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_8h | 1.16759578656346 | 0.00586712441339471 |
| 5 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_24h | 1.06245041494456 | 0.0338193127867881 |
| 6 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -1.57319790966544 | 0.0014192906161833 |