Chr:
Chr4
Start:
19715211
End:
19715231
Strand:
+
Sequence:
AGCGCCCAAGCGGUAGUUGUC
Length:
21
precursor sequence:
GCACAACACUAGUAUUUGGGAGGCAACUACACGUUGGGCGCUCGAUCCAGGGGUGGGAAAAUCGGGCGCCCACGUUUUCCCCACCCCCGGAUCGAGCGCCCAAGCGGUAGUUGUCUCCCAAAUACUUGUGCUGUGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
66
NEP:
24.09%
LE_num:
LEP:
5.11%
ME_num:
MEP:
33.21%
HE_num:
HEP:
37.59%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
blade
Tau :
0.88
Avg Expression:
317.88
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -1.72614742621059 | 2.13061552914327e-05 |
2 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -1.92591437936236 | 5.03613462206338e-06 |