Chr:
Chr4
Start:
23654557
End:
23654576
Strand:
+
Sequence:
GGCGGAUGUAGCCAAGUGGA
Length:
20
precursor sequence:
CCUUCAUAUUGACCUUUUCUAUUUUUGCCAAUAAAUGAUGAGCUACAAAAGGAUUCAUUUUUUUUCGUGUCACAGCUGAUUACUCCUUUUUUUCCAUUUUAAAGAGUGGCAUUCGAUGUCCAAUAUCUCGAUCGAAGUAUGGAGGUCAGAAUAAAUAGAAUAAUGAUGAAUGGAAAAAAGAGAAAAUCCUUUAGCUGGAUAAGGGGCGGAUGUAGCCAAGUGGAUCAAGGCAGUGGAUUGUGAAUCCACC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
0
NEP:
0.0%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
28.1%
HE_num:
HEP:
71.9%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.86
Avg Expression:
2832.26
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(2) | 1.74342493187251 | 2.78979541436849e-15 |
| 2 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(1) | -1.14753157590619 | 0.000207979700170458 |
| 3 | HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 12h | -2.05143108258268 | 0.00535919240191489 |
| 4 | HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 24h | -1.67768920750881 | 0.0250993998397109 |
| 5 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -4.4407432174718 | 3.03435915304376e-210 |
| 6 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -5.96924134422721 | 2.67859743057335e-300 |
| 7 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | -7.34496649776824 | 0 |
| 8 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | -6.05027259503965 | 2.20102739970491e-98 |
| 9 | PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17 | -1.58417405884498 | 5.59212728727661e-56 |
| 10 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | 3.26231252415471 | 7.81527290314883e-225 |