| SRR8258057 | leaf_sheath | R_bph_eaR_bphly | 33.96 | HC |
| SRR3140955 | leaf | "45C, 12h" | 25.18 | HC |
| SRR8258053 | leaf_sheath | R_bph_eaR_bphly | 731.90 | HC |
| SRR5049778 | anther | floret length/mm: 2.6-2.8 | 1993.83 | HC |
| SRR8258050 | leaf_sheath | R_bph | 360.94 | HC |
| SRR5120079 | leaf_sheath | PC_0 | 30.40 | HC |
| SRR8258055 | leaf_sheath | R_bph_eaR_bphly | 3560.64 | HC |
| SRR6810106 | panicle | panicle | 15.32 | HC |
| SRR7058097 | leaf | rice_mock | 1055.49 | HC |
| SRR771500 | endosperm | Endosperm Cultivar Kitaake KNA | 8.67 | HC |
| SRR7058098 | leaf | rice_RSV | 2835.84 | HC |
| SRR3234043 | pollen | floret length/mm: 2.50-3.00 | 45.25 | HC |
| SRR2154074 | seed | Nipponbare_seed | 189.53 | HC |
| SRR2154072 | seed | Rathuwee_seed | 108.20 | HC |
| SRR2154073 | seed | Heukgyeong_seed | 549.28 | HC |
| SRR2154070 | seed | Guangluai4_seed | 295.58 | HC |
| SRR2154071 | seed | KDM105_seed | 129.22 | HC |
| SRR4098204 | seedling | Drought (air-dried) | 160.76 | HC |
| SRR1061625 | panicle | Heat Stress | 15.88 | HC |
| SRR1612403 | leaf | WT wild type (miRNA) | 543.25 | HC |
| SRR1061622 | flag_leaf | Normal | 31.17 | HC |
| SRR1061621 | flag_leaf | Heat Stress | 24.10 | HC |
| SRR1061620 | flag_leaf | Normal | 21.38 | HC |
| SRR10704058 | leaf | Glyphosate | 965.02 | HC |
| SRR447128 | root | As(III) 20 uM | 63.84 | HC |
| SRR3234042 | pollen | floret length/mm: 5.50-6.00 | 64.54 | HC |
| SRR1013785 | flag_leaf | LYP9_FL | 57.73 | HC |
| SRR1013784 | flag_leaf | PA64s_FL | 125.95 | HC |
| SRR1013787 | panicle | PA64s_PA | 622.23 | HC |
| SRR1013786 | flag_leaf | 93-11_FL | 25.62 | HC |
| SRR504363 | leaf | 93-11 X NPB | 3434.77 | HC |
| SRR771498 | endosperm | Endosperm Cultivar Nipponbare NNA | 21.53 | HC |
| SRR1013789 | panicle | 93-11_PA | 800.26 | HC |
| SRR1013788 | panicle | LYP9_PA | 755.00 | HC |
| SRR9070101 | shoot_base | WT_base | 364.94 | HC |
| SRR426799 | leaf | mock-treated susceptible rice line | 99770.07 | HC |
| SRR6810105 | panicle | panicle | 9.98 | HC |
| SRR089619 | panicle | control | 37.36 | HC |
| SRR447135 | shoot | As(III) 20 uM | 605.97 | HC |
| SRR447134 | shoot | As(III) 80 uM | 269.57 | HC |
| SRR447133 | shoot | As(III) 20 uM | 272.18 | HC |
| SRR447132 | shoot | control for As(III) 20/80 uM | 605.26 | HC |
| SRR447131 | root | As(III) 80 uM | 261.98 | HC |
| SRR447130 | root | As(III) 20 uM | 40.99 | HC |
| SRR1849765 | leaf | Control 30min | 73.45 | HC |
| SRR1849767 | leaf | Control 30min | 156.85 | HC |
| SRR1849768 | leaf | Margaporthe oryzae 30min | 126.65 | HC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 80.85 | HC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 624.47 | HC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 91.15 | HC |
| SRR6498701 | leaf | "WT, Control" | 60.84 | HC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 129.35 | HC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 3087.55 | HC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 1649.97 | HC |
| SRR3203907 | leaf | WT | 864.29 | HC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 179.24 | HC |
| SRR771497 | shoot | Shoot Cultivar Nipponbare RSG | 826.97 | HC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 7.39 | HC |
| SRR447129 | root | As(III) 80 uM | 636.48 | HC |
| SRR1849776 | leaf | Margaporthe oryzae 120min | 135.01 | HC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 164.08 | HC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 103.28 | HC |
| SRR1849773 | leaf | Control 120min | 397.38 | HC |
| SRR1849772 | leaf | Control 120min | 57.40 | HC |
| SRR1849771 | leaf | Control 120min | 534.58 | HC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 73.33 | HC |
| SRR3130372 | leaf | 24 hpi;M.oryzae | 430.96 | HC |
| SRR3130373 | leaf | 48 hpi;M.oryzae | 2682.02 | HC |
| SRR3130370 | leaf | control 8 hour | 1074.55 | HC |
| SRR3130371 | leaf | 24 hpi;M.oryzae | 2294.19 | HC |
| SRR3130374 | leaf | 48 hpi;M.oryzae | 1148.63 | HC |
| SRR7058096 | leaf | rice_mock | 227.11 | HC |
| SRR1742988 | endosperm | 4X_En_sRNA | 37.61 | HC |
| SRR1742989 | endosperm | 4X_En_sRNA | 24.73 | HC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 85.13 | HC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 39.56 | HC |
| SRR6365689 | seedling | Wild type | 3144.70 | HC |
| SRR447136 | shoot | As(III) 80 uM | 502.26 | HC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 120.34 | HC |
| SRR10704060 | leaf | Glyphosate | 1048.23 | HC |
| SRR5120082 | leaf_sheath | P15_0 | 37.49 | HC |
| SRR5049779 | anther | floret length/mm: 3.8-4.0 | 209.86 | HC |
| SRR2154075 | seed | Taipei309_seed | 132.44 | HC |
| SRR3140952 | leaf | "45C, 0h" | 223.92 | HC |
| SRR4098208 | root | No treatment | 177.16 | HC |
| SRR089774 | panicle | wild-type | 14.77 | HC |
| SRR4098209 | leaf | No treatment | 464.87 | HC |
| SRR3130369 | leaf | control 8 hour | 1460.61 | HC |
| SRR3130368 | leaf | 8 hpi;M.oryzae | 1012.08 | HC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 16.99 | HC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 7.23 | HC |
| SRR9070100 | shoot_base | WT_base | 318.49 | HC |
| SRR4098205 | seedling | Heat (50C) | 168.93 | HC |
| SRR6810104 | flag_leaf | flag_leaf | 32.96 | HC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 59.10 | HC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 30.49 | HC |
| SRR3130365 | leaf | control 0 hour | 2134.92 | HC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 24.67 | HC |
| SRR3130367 | leaf | 8 hpi;M.oryzae | 937.81 | HC |
| SRR3130366 | leaf | control 0 hour | 932.93 | HC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 42.53 | HC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 47.22 | HC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 36.20 | HC |
| SRR1742993 | endosperm | 2X4_En_sRNA | 17.00 | HC |
| SRR1742992 | endosperm | 2X4_En_sRNA | 14.48 | HC |
| SRR1742991 | endosperm | 2X4_En_sRNA | 15.09 | HC |
| SRR1742990 | endosperm | 4X_En_sRNA | 13.83 | HC |
| SRR2862364 | leaf | mock leaf cells | 25095.67 | HC |
| SRR2862365 | leaf | mock leaf cells | 39371.81 | HC |
| SRR2862366 | leaf | viruliferous Infected leaf cells | 322.22 | HC |
| SRR2862367 | leaf | viruliferous Infected leaf cells | 3085.61 | HC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 129.69 | HC |
| SRR2862363 | leaf | mock leaf cells | 357.59 | HC |
| SRR4098207 | panicle | No treatment | 195.82 | HC |
| SRR10704055 | leaf | CK | 216.58 | HC |
| SRR10704057 | leaf | CK | 309.82 | HC |
| SRR10704056 | leaf | CK | 267.08 | HC |
| SRR10704059 | leaf | Glyphosate | 137.69 | HC |
| SRR1061623 | flag_leaf | Heat Stress | 24.41 | HC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 47.86 | HC |
| SRR9070102 | shoot_base | WT_base | 322.69 | HC |
| SRR6498699 | leaf | "WT, Control" | 53.31 | HC |
| SRR2646852 | panicle | FP | 9.22 | HC |
| SRR2646853 | panicle | FP | 19.50 | HC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 3995.81 | HC |
| SRR3234045 | pollen | floret length/mm: 5.50-6.00 | 198.69 | HC |
| SRR5049784 | anther | floret length/mm: 6.0-6.5 | 583.71 | HC |
| SRR5049785 | anther | floret length/mm: >7.0 | 11569.88 | HC |
| SRR4098203 | seedling | No treatment | 522.59 | HC |
| SRR5049783 | anther | floret length/mm: 4.3-4.5 | 337.77 | HC |
| SRR5049780 | anther | floret length/mm: 5.0-5.5 | 141.29 | HC |
| SRR3234044 | pollen | floret length/mm: 3.80-4.30 | 127.83 | HC |
| SRR6365690 | seedling | Wild type | 3293.63 | HC |
| SRR5049782 | anther | floret length/mm: 3.1-3.3 | 2240.80 | HC |
| SRR6365692 | panicle | Wild type | 2409.76 | HC |
| SRR6365693 | panicle | Wild type | 28.91 | HC |
| SRR6365694 | panicle | Wild type | 23.68 | HC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 772.14 | HC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 2296.21 | HC |
| SRR5049789 | ovary | floret length/mm: >6.5 | 124.40 | HC |
| SRR6810101 | seedling | seedling | 72.57 | HC |
| SRR5049781 | anther | floret length/mm: >6.5 | 389.60 | HC |
| SRR8258063 | leaf_sheath | S_bph feeding | 200.66 | HC |
| SRR8258060 | leaf_sheath | R_bph_late | 201.91 | HC |
| SRR6365691 | panicle | Wild type | 2421.43 | HC |
| SRR3110556 | shoot | shoot control | 959.71 | HC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 1089.07 | HC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 45.99 | HC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 1109.53 | HC |
| SRR1061616 | panicle | Normal | 9.48 | HC |
| SRR1061617 | panicle | Heat Stress | 230.47 | HC |
| SRR1061614 | panicle | Normal | 9.93 | HC |
| SRR1061615 | panicle | Heat Stress | 14.27 | HC |
| SRR1061612 | panicle | Normal | 15.27 | HC |
| SRR1061613 | panicle | Heat Stress | 18.88 | HC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 409.69 | HC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 178.98 | HC |
| SRR6810103 | flag_leaf | flag_leaf | 31.18 | HC |
| SRR1061619 | flag_leaf | Heat Stress | 19.53 | HC |
| SRR9937395 | spikelet | sRNA basal spikelets | 178.91 | HC |
| SRR9937394 | spikelet | sRNA apical spikelets | 42.57 | HC |
| SRR447127 | root | control for As(III) 20/80 uM | 389.62 | HC |
| SRR8258071 | leaf_sheath | S_bph feeding_late | 114.95 | HC |
| SRR8258073 | leaf_sheath | S_bph feeding_late | 112.27 | HC |
| SRR2544788 | embryo | 24 hours imbibition | 56.51 | HC |
| SRR3140954 | leaf | "45C, 12h" | 147.83 | HC |
| SRR089621 | panicle | cold | 164.96 | HC |
| SRR089620 | panicle | drought | 70.11 | HC |
| SRR3140957 | leaf | "45C, 24h" | 349.03 | HC |
| SRR089622 | panicle | salt | 22.16 | HC |
| SRR504360 | leaf | Nipponbare | 1944.92 | HC |
| SRR504361 | leaf | Nov-93 | 1502.43 | HC |
| SRR2544786 | embryo | dry seed | 12.15 | HC |
| SRR4098172 | seedling | Cold (4C) | 745.61 | HC |
| SRR3140956 | leaf | "45C, 24h" | 156.99 | HC |
| SRR3140953 | leaf | "45C, 0h" | 477.69 | HC |
| SRR6810102 | seedling | seedling | 91.90 | HC |
| SRR8258067 | leaf_sheath | S_bph feeding_early | 119.40 | HC |
| SRR10956502 | panicle | WT | 305.78 | HC |
| SRR2862368 | leaf | viruliferous Infected leaf cells | 9441.21 | HC |
| SRR10956501 | panicle | WT | 307.55 | HC |
| SRR8258065 | leaf_sheath | S_bph feeding | 115.08 | HC |
| SRR8258048 | leaf_sheath | R_bph | 223.52 | HC |
| SRR1740023 | seedling | IR64-Control | 397.41 | HC |
| SRR1740025 | seedling | PK-Control | 551.24 | HC |
| SRR1740024 | seedling | N22-Control | 1078.06 | HC |
| SRR5120081 | leaf_sheath | PC_48 | 46.10 | HC |
| SRR5120080 | leaf_sheath | PC_6 | 38.73 | HC |
| SRR8258061 | leaf_sheath | S_bph feeding | 765.50 | HC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 38.44 | HC |
| SRR1654490 | leaf | wild type | 989.32 | HC |
| SRR3110557 | shoot | shoot treated | 780.19 | HC |
| SRR5940086 | panicle | Wild type | 21.87 | HC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 46.30 | HC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 5.09 | HC |
| SRR8258051 | leaf_sheath | R_bph | 258.53 | HC |
| SRR504362 | leaf | NPB X 93-11 | 1645.94 | HC |