Chr:
Chr4
Start:
6536571
End:
6536591
Strand:
+
Sequence:
CGGUCUUGUGGCAAGAACUGA
Length:
21
precursor sequence:
GUGUUGCAUAUUCUUAGGCCCGGUCUUGUGGCAAGAACUGAGUAGUUCGUUAACUCGCUACGCGGUUCUUGUCACAAGACCGAGUCUGUGAAUAUGCAAAGGUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
59
NEP:
21.53%
LE_num:
LEP:
18.98%
ME_num:
MEP:
57.66%
HE_num:
HEP:
1.82%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.73
Avg Expression:
4.98
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | -3.47077617045764 | 0.00325057318768083 |
| 2 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | -2.94147439190761 | 0.036730315847679 |
| 3 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | 6.18331529004924 | 0.00478672480858504 |
| 4 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | -2.45581262872658 | 3.00727164203694e-05 |
| 5 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_8h | -2.61844176467867 | 9.99258596818285e-06 |
| 6 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | -4.50610460331147 | 2.54771651635225e-14 |
| 7 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | -1.54591396594268 | 0.0498134197270615 |
| 8 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_eaR_bphly | -2.5640314656234 | 0.00168561838038292 |