Chr:
Chr4
Start:
18386989
End:
18387009
Strand:
-
Sequence:
UAGGAUAUGGUAAUGCUAAAA
Length:
21
precursor sequence:
AUGUAUUUUUUUAGCAUUACCAUAUCCUAUUUGGCAAUGAAUUUCACUUUAGACAAUCCAAUCUUAAGAACAUACUCUAGUAUAUGAAAUUCAUUGCCAAAUAGGAUAUGGUAAUGCUAAAAAAAAAUACAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
37
NEP:
13.5%
LE_num:
LEP:
25.18%
ME_num:
MEP:
58.39%
HE_num:
HEP:
2.92%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.88
Avg Expression:
9.90
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | 1.62041638560706 | 0.0418226384423073 |
| 2 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_8h | 1.58062330688107 | 0.0176870694455503 |
| 3 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h | 1.29181860307787 | 0.0388243237269362 |