Chr:
Chr4
Start:
12430353
End:
12430374
Strand:
+
Sequence:
GGACAAUCAAACGUUGGACACG
Length:
22
precursor sequence:
AGACAAACCCUGGGUUUUUGUGUCCAACGUUGGACCGCCCGUCUUAUUUGAAAAAUUAUAAAAAAUUUAAAAAGACAAGUCACGCAUAAAGUAUUAAUCAUGUUUUAUCAUCUAACAACAAUGAAAAUACUAAUUAUAAAAAAAUUUCAUAUAAGACGGACAAUCAAACGUUGGACACGGAAACCCAUAGUUUAUCUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
3
NEP:
1.09%
LE_num:
LEP:
4.74%
ME_num:
MEP:
91.61%
HE_num:
HEP:
2.55%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.60
Avg Expression:
6.12
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf_sheath // S_bph feeding--/--BPH6-transgenic line // leaf_sheath // R_bph | -1.2670111819032 | 0.0245587572080592 |
| 2 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | -3.31436820363073 | 1.7569707982113e-15 |
| 3 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | 1.22109271886666 | 0.0474211789367563 |