RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

osa-miR171c-5p_miRbase

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr4

Start:

31713541

End:

31713561

Strand:

-

Sequence:

GGAUAUUGGUGCGGUUCAAUC

Length:

21

precursor sequence:

GUGGGAACGGGAUAUUGGUGCGGUUCAAUCAGAAAGCUUGUGCUCCGAAGGCGAGGGGCUCCACUCUUUGAUUGAGCCGUGCCAAUAUCACGUCGCCUU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

36

NEP:

13.14%

LE_num:

49

LEP:

17.88%

ME_num:

179

MEP:

65.33%

HE_num:

10

HEP:

3.65%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

seed

Tau :

0.79

Avg Expression:

10.29

Tip: osa-miR171c-5p_miRbase is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h-2.095068457151090.00332596178676808
2Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late-1.68982712900450.00452836349690293
3Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early-1.649608449538340.00285622217746427