Chr:
Chr4
Start:
31805344
End:
31805364
Strand:
-
Sequence:
GUGAAGUGUUUGGGGGAACUC
Length:
21
precursor sequence:
GAGUCCCUAGGAGUUCCUUUCAAGCACUUUACGACACACUGUAUUGAGAGUUGUCGUGAAGUGUUUGGGGGAACUCUUAGUGUCGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
13
NEP:
4.74%
LE_num:
LEP:
8.39%
ME_num:
MEP:
71.53%
HE_num:
HEP:
15.33%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.86
Avg Expression:
50.30
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf_sheath // S_bph feeding--/--BPH6-transgenic line // leaf_sheath // R_bph | 1.27293789771408 | 9.67382092356301e-08 |
| 2 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | -1.72434816986608 | 2.62074727743301e-09 |
| 3 | none // leaves // WT, Control--/--none // leaves // DCL1a mutant, Control | 2.97867998002651 | 0.0306698683931606 |
| 4 | none // leaves // DCL1a mutant, Control--/--none // leaves // DCL1a mutant, M. oryzae Infected | -3.02513256394001 | 0.0392607613700238 |
| 5 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | 3.70201080859834 | 0.0179367598614889 |