Chr:
Chr4
Start:
30712419
End:
30712439
Strand:
-
Sequence:
CAGCCAAGGAUGACUUGCCGG
Length:
21
precursor sequence:
GUGAGGAGGAGAACGGGAUGCAGCCAAGGAUGACUUGCCGGCUCCUGGUAUUGGGGGAAUCUCAGCUUUGCUGAAGCGCCUUGGAGUUAGCCGGCAAGUCUGUCCUUGGCUACACCUAGCUCUCUUCUUCUAGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
11
NEP:
4.01%
LE_num:
LEP:
6.93%
ME_num:
MEP:
47.45%
HE_num:
HEP:
41.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.88
Avg Expression:
428.23
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -2.24119130653984 | 0.00041375088945811 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -3.76937002097378 | 1.08545518471835e-05 |
| 3 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -2.41214410426986 | 9.40231266222369e-06 |