Chr:
Chr4
Start:
18477956
End:
18477977
Strand:
+
Sequence:
UAGCUAUGAGAUCUGAGGGGUA
Length:
22
precursor sequence:
UAAUUGUUCCAAUAUGUUUGCUGUUCGUUUCAUGAGUUGAUUGAUGAUGCCCCAGUGAAGAUAAAGUUUCGGUCCGAAGAUGAUUUGGAUUGUCUGGUUUUAGCUUCAAGCCUUCUUGUCAUCUAACUUUGAUAAUUGGAUGGCUUGUGGCUAAAACCAUCACUGCUAAGAAUCAUCAGUGAUGGCCAAUAAUAGCUAUGAGAUCUGAGGGGUAAAACUGCCACAGUACAAUAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.36%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
27.74%
HE_num:
HEP:
71.9%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.62
Avg Expression:
82.33
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(2) | 1.05980477088193 | 4.28167780604012e-08 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -2.34704438912395 | 9.14976596436186e-37 |
| 3 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -2.64342630473315 | 3.43095531838635e-41 |
| 4 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | -1.22453354402226 | 7.48548858083207e-11 |
| 5 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | 1.91842843153374 | 1.20373426358586e-42 |
| 6 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_eaR_bphly | 1.67180919990358 | 0.000733515789305306 |
| 7 | none // leaves // WT, Control--/--none // leaves // DCL1a mutant, Control | 2.50906746396882 | 0.0159031792137511 |