| SRR5049778 | anther | floret length/mm: 2.6-2.8 | 117.64 | HC |
| SRR5120079 | leaf_sheath | PC_0 | 31.25 | HC |
| SRR6810106 | panicle | panicle | 17.68 | HC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 11.15 | HC |
| SRR7058098 | leaf | rice_RSV | 36.35 | HC |
| SRR3234043 | pollen | floret length/mm: 2.50-3.00 | 31.62 | HC |
| SRR2154076 | seedling | Guangluai4_seedling | 47.41 | HC |
| SRR2154077 | seedling | KDM105_seedling | 31.48 | HC |
| SRR2154072 | seed | Rathuwee_seed | 5.14 | HC |
| SRR2154073 | seed | Heukgyeong_seed | 9.99 | HC |
| SRR2154070 | seed | Guangluai4_seed | 7.95 | HC |
| SRR4098204 | seedling | Drought (air-dried) | 20.66 | HC |
| SRR1061625 | panicle | Heat Stress | 22.96 | HC |
| SRR1061624 | panicle | Normal | 23.26 | HC |
| SRR1612403 | leaf | WT wild type (miRNA) | 35.73 | HC |
| SRR1061622 | flag_leaf | Normal | 45.25 | HC |
| SRR1061621 | flag_leaf | Heat Stress | 33.90 | HC |
| SRR1061620 | flag_leaf | Normal | 21.79 | HC |
| SRR447128 | root | As(III) 20 uM | 16.99 | HC |
| SRR3234042 | pollen | floret length/mm: 5.50-6.00 | 29.36 | HC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 23.28 | HC |
| SRR1013785 | flag_leaf | LYP9_FL | 37.92 | HC |
| SRR1013784 | flag_leaf | PA64s_FL | 28.47 | HC |
| SRR1013787 | panicle | PA64s_PA | 28.64 | HC |
| SRR1013786 | flag_leaf | 93-11_FL | 40.75 | HC |
| SRR1013789 | panicle | 93-11_PA | 12.51 | HC |
| SRR1013788 | panicle | LYP9_PA | 17.09 | HC |
| SRR9070101 | shoot_base | WT_base | 5.92 | HC |
| SRR426799 | leaf | mock-treated susceptible rice line | 103.96 | HC |
| SRR6810105 | panicle | panicle | 22.39 | HC |
| SRR089619 | panicle | control | 8.17 | HC |
| SRR447135 | shoot | As(III) 20 uM | 44.98 | HC |
| SRR447133 | shoot | As(III) 20 uM | 25.31 | HC |
| SRR447131 | root | As(III) 80 uM | 193.52 | HC |
| SRR447130 | root | As(III) 20 uM | 31.78 | HC |
| SRR1849765 | leaf | Control 30min | 66.23 | HC |
| SRR1849767 | leaf | Control 30min | 106.99 | HC |
| SRR1849768 | leaf | Margaporthe oryzae 30min | 21.65 | HC |
| SRR1849769 | leaf | Margaporthe oryzae 30min | 79.03 | HC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 80.11 | HC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 68.20 | HC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 102.35 | HC |
| SRR771496 | shoot | Shoot Cultivar Nipponbare RSF | 48.73 | HC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 99.97 | HC |
| SRR3203907 | leaf | WT | 16.85 | HC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 41.52 | HC |
| SRR12416748 | blade | sRNA_Blade_S5 | 13.77 | HC |
| SRR12416741 | blade | sRNA_Blade_S1 | 17.51 | HC |
| SRR12416740 | blade | sRNA_Blade_S1 | 17.93 | HC |
| SRR12416743 | blade | sRNA_Blade_S2 | 20.14 | HC |
| SRR12416742 | blade | sRNA_Blade_S2 | 18.72 | HC |
| SRR12416745 | blade | sRNA_Blade_S3 | 14.23 | HC |
| SRR12416744 | blade | sRNA_Blade_S3 | 10.44 | HC |
| SRR12416747 | blade | sRNA_Blade_S4 | 16.02 | HC |
| SRR12416746 | blade | sRNA_Blade_S4 | 14.78 | HC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 30.88 | HC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 47.27 | HC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 24.58 | HC |
| SRR447129 | root | As(III) 80 uM | 13.20 | HC |
| SRR1849776 | leaf | Margaporthe oryzae 120min | 20.59 | HC |
| SRR1849775 | leaf | Margaporthe oryzae 120min | 71.68 | HC |
| SRR1849774 | leaf | Margaporthe oryzae 120min | 60.14 | HC |
| SRR1849773 | leaf | Control 120min | 57.64 | HC |
| SRR1849772 | leaf | Control 120min | 63.50 | HC |
| SRR1849771 | leaf | Control 120min | 53.34 | HC |
| SRR1849770 | leaf | Margaporthe oryzae 30min | 71.19 | HC |
| SRR3130373 | leaf | 48 hpi;M.oryzae | 13.08 | HC |
| SRR3130370 | leaf | control 8 hour | 17.93 | HC |
| SRR3130374 | leaf | 48 hpi;M.oryzae | 12.42 | HC |
| SRR7058096 | leaf | rice_mock | 31.51 | HC |
| SRR1742988 | endosperm | 4X_En_sRNA | 61.85 | HC |
| SRR1742989 | endosperm | 4X_En_sRNA | 38.52 | HC |
| SRR2154081 | seedling | Taipei309_seedling | 56.73 | HC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 26.35 | HC |
| SRR5120084 | leaf_sheath | P15_48 | 18.23 | HC |
| SRR6365689 | seedling | Wild type | 114.73 | HC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 25.94 | HC |
| SRR5120083 | leaf_sheath | P15_6 | 23.18 | HC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 38.14 | HC |
| SRR5120082 | leaf_sheath | P15_0 | 33.34 | HC |
| SRR5049779 | anther | floret length/mm: 3.8-4.0 | 48.34 | HC |
| SRR2154075 | seed | Taipei309_seed | 13.74 | HC |
| SRR976171 | lamina_joint | wild type | 73.27 | HC |
| SRR4098208 | root | No treatment | 33.76 | HC |
| SRR4098209 | leaf | No treatment | 30.76 | HC |
| SRR3130369 | leaf | control 8 hour | 23.56 | HC |
| SRR3130368 | leaf | 8 hpi;M.oryzae | 20.87 | HC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 34.86 | HC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 16.82 | HC |
| SRR9070100 | shoot_base | WT_base | 6.51 | HC |
| SRR4098205 | seedling | Heat (50C) | 36.08 | HC |
| SRR6810104 | flag_leaf | flag_leaf | 55.25 | HC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 61.46 | HC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 24.63 | HC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 49.71 | HC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 32.78 | HC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 21.13 | HC |
| SRR3130367 | leaf | 8 hpi;M.oryzae | 25.05 | HC |
| SRR3130366 | leaf | control 0 hour | 24.21 | HC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 91.04 | HC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 92.12 | HC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 79.62 | HC |
| SRR1742993 | endosperm | 2X4_En_sRNA | 82.54 | HC |
| SRR1742992 | endosperm | 2X4_En_sRNA | 47.59 | HC |
| SRR1742991 | endosperm | 2X4_En_sRNA | 49.12 | HC |
| SRR1742990 | endosperm | 4X_En_sRNA | 45.81 | HC |
| SRR2862364 | leaf | mock leaf cells | 64.56 | HC |
| SRR2862365 | leaf | mock leaf cells | 171.88 | HC |
| SRR4098206 | seedling | Highlight (50000 Lux) | 24.71 | HC |
| SRR8649147 | panicle | panicle tissue | 9.44 | HC |
| SRR4098207 | panicle | No treatment | 45.43 | HC |
| SRR10704059 | leaf | Glyphosate | 15.88 | HC |
| SRR1061623 | flag_leaf | Heat Stress | 47.50 | HC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 43.72 | HC |
| SRR9070102 | shoot_base | WT_base | 6.06 | HC |
| SRR2154078 | seedling | Rathuwee_seedling | 26.94 | HC |
| SRR2154079 | seedling | Heukgyeong_seedling | 58.51 | HC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 53.93 | HC |
| SRR2646852 | panicle | FP | 120.66 | HC |
| SRR2646853 | panicle | FP | 67.35 | HC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 41.11 | HC |
| SRR2646854 | panicle | SP | 36.37 | HC |
| SRR2646855 | panicle | SP | 78.38 | HC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 83.85 | HC |
| SRR3234045 | pollen | floret length/mm: 5.50-6.00 | 79.89 | HC |
| SRR5049784 | anther | floret length/mm: 6.0-6.5 | 131.46 | HC |
| SRR5049785 | anther | floret length/mm: >7.0 | 71.70 | HC |
| SRR4098203 | seedling | No treatment | 25.08 | HC |
| SRR5049783 | anther | floret length/mm: 4.3-4.5 | 71.54 | HC |
| SRR5049780 | anther | floret length/mm: 5.0-5.5 | 35.18 | HC |
| SRR3234044 | pollen | floret length/mm: 3.80-4.30 | 51.29 | HC |
| SRR6365690 | seedling | Wild type | 126.39 | HC |
| SRR5049782 | anther | floret length/mm: 3.1-3.3 | 63.52 | HC |
| SRR6365692 | panicle | Wild type | 167.62 | HC |
| SRR6365693 | panicle | Wild type | 53.69 | HC |
| SRR6365694 | panicle | Wild type | 42.84 | HC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 56.77 | HC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 106.39 | HC |
| SRR5049789 | ovary | floret length/mm: >6.5 | 69.25 | HC |
| SRR6810101 | seedling | seedling | 51.31 | HC |
| SRR5049781 | anther | floret length/mm: >6.5 | 52.65 | HC |
| SRR12416738 | lamina_joint | sRNA_LJ_S5 | 5.65 | HC |
| SRR12416739 | lamina_joint | sRNA_LJ_S5 | 8.28 | HC |
| SRR1849784 | root | Control 120min | 47.59 | HC |
| SRR6365691 | panicle | Wild type | 144.68 | HC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 29.05 | HC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 25.35 | HC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 14.37 | HC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 27.82 | HC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 16.01 | HC |
| SRR12416737 | lamina_joint | sRNA_LJ_S4 | 12.54 | HC |
| SRR771494 | root | Root Cultivar Nipponbare RRF | 24.81 | HC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 26.63 | HC |
| SRR771495 | root | Root Cultivar Nipponbare RRG | 32.74 | HC |
| SRR1061616 | panicle | Normal | 23.44 | HC |
| SRR1061617 | panicle | Heat Stress | 30.54 | HC |
| SRR1061614 | panicle | Normal | 14.46 | HC |
| SRR1061615 | panicle | Heat Stress | 27.59 | HC |
| SRR1061612 | panicle | Normal | 18.74 | HC |
| SRR1061613 | panicle | Heat Stress | 23.08 | HC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 45.71 | HC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 25.30 | HC |
| SRR4098202 | seedling | High-salt (300 mM NaCl) | 32.83 | HC |
| SRR6810103 | flag_leaf | flag_leaf | 60.42 | HC |
| SRR1061618 | flag_leaf | Normal | 26.73 | HC |
| SRR1061619 | flag_leaf | Heat Stress | 34.78 | HC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 18.21 | HC |
| SRR447127 | root | control for As(III) 20/80 uM | 45.38 | HC |
| SRR2544788 | embryo | 24 hours imbibition | 31.67 | HC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 30.20 | HC |
| SRR3140954 | leaf | "45C, 12h" | 14.66 | HC |
| SRR089621 | panicle | cold | 27.69 | HC |
| SRR089620 | panicle | drought | 21.88 | HC |
| SRR3140957 | leaf | "45C, 24h" | 16.70 | HC |
| SRR089622 | panicle | salt | 8.94 | HC |
| SRR2544787 | embryo | 12 hours imbibition | 45.68 | HC |
| SRR2544786 | embryo | dry seed | 65.34 | HC |
| SRR4098172 | seedling | Cold (4C) | 69.22 | HC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 17.31 | HC |
| SRR3140953 | leaf | "45C, 0h" | 7.84 | HC |
| SRR6810102 | seedling | seedling | 53.49 | HC |
| SRR10956502 | panicle | WT | 34.27 | HC |
| SRR2862368 | leaf | viruliferous Infected leaf cells | 71.75 | HC |
| SRR10956501 | panicle | WT | 34.30 | HC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 11.16 | HC |
| SRR1740023 | seedling | IR64-Control | 264.44 | HC |
| SRR2154080 | seedling | Nipponbare_seedling | 13.20 | HC |
| SRR1740025 | seedling | PK-Control | 226.79 | HC |
| SRR1740024 | seedling | N22-Control | 284.23 | HC |
| SRR5120081 | leaf_sheath | PC_48 | 24.86 | HC |
| SRR5120080 | leaf_sheath | PC_6 | 24.50 | HC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 30.39 | HC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 16.58 | HC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 15.49 | HC |
| SRR1654490 | leaf | wild type | 19.09 | HC |
| SRR5940086 | panicle | Wild type | 45.82 | HC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 7.06 | HC |