RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

osa-miR5150-3p_miRbase

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr4

Start:

18470833

End:

18470856

Strand:

+

Sequence:

AGAAGCUGCAGCUGUCAGAAGCUC

Length:

24

precursor sequence:

GUUUGGGGGAGCUUCUGACAGCUGCAGUUUCUCUUGUUCUAGGAGAAGCUGCAGCUGUCAGAAGCUCCCCCAAACAUGG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

3

NEP:

1.09%

LE_num:

1

LEP:

0.36%

ME_num:

87

MEP:

31.75%

HE_num:

183

HEP:

66.79%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

embryo

Tau :

0.81

Avg Expression:

127.60

Tip: osa-miR5150-3p_miRbase is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late1.140891431538871.45163256271839e-06
2none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA-1.064810604164840.00983982888085463
3none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA-1.339464012585010.00244035597986036