Chr:
Chr4
Start:
34931960
End:
34931981
Strand:
-
Sequence:
UCCAAAGGGAUCGCAUUGAUCU
Length:
22
precursor sequence:
UCGGCCUGAGGAAACUAGUGGAGGACUCCAAAGGGAUCGCAUUGAUCUGGCUAGCUAUCUCGAUCGAUCGCCUCAUCGAUCGACGACGACGUGCGUGAUCGAUCAGUGCAAUCCCUUUGGAAUUUUCCUCUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
5
NEP:
1.82%
LE_num:
LEP:
1.09%
ME_num:
MEP:
28.1%
HE_num:
HEP:
68.98%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.95
Avg Expression:
1079.86
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 12h | 1.97194248323275 | 0.0373467833404958 |
| 2 | HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 24h | 2.86925328555189 | 0.000358513283875862 |
| 3 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | -1.20953429853466 | 1.422684472799e-15 |
| 4 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | -1.19086462039186 | 8.21731385817047e-05 |
| 5 | none // leaves // WT, Control--/--none // leaves // DCL1a mutant, Control | -2.14311522724325 | 0.00555937877608966 |
| 6 | none // leaves // DCL1a mutant, Control--/--none // leaves // DCL1a mutant, M. oryzae Infected | 2.0755047272029 | 0.0377974208337663 |
| 7 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | 1.36748957484664 | 0.0139160173758467 |