Chr:
Chr4
Start:
31804922
End:
31804942
Strand:
-
Sequence:
GUGAAGUGUUUGGGGGAACUC
Length:
21
precursor sequence:
GUAUUAUCGAGAGUUCCCUUCAACCACUUCACGUGGCACUGUUUCAAGGCCUAUUGUGUGAAGUGUUUGGGGGAACUCUCGAUAUCAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
12
NEP:
4.38%
LE_num:
LEP:
6.57%
ME_num:
MEP:
72.99%
HE_num:
HEP:
16.06%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.86
Avg Expression:
50.64
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf_sheath // S_bph feeding--/--BPH6-transgenic line // leaf_sheath // R_bph | 1.28001923283856 | 7.68383620993789e-08 |
| 2 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | -1.71281965115269 | 3.01878015511882e-09 |
| 3 | none // leaves // WT, Control--/--none // leaves // DCL1a mutant, Control | 2.98804186011818 | 0.0306698683931606 |
| 4 | none // leaves // DCL1a mutant, Control--/--none // leaves // DCL1a mutant, M. oryzae Infected | -3.03454163681235 | 0.0392607613700238 |
| 5 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | 3.25252086304921 | 0.0213604796699465 |