Chr:
Chr4
Start:
21656982
End:
21657003
Strand:
-
Sequence:
UUCCUGAUGCCUCUCAUUCCUA
Length:
22
precursor sequence:
UGGAAACUUAGUUUCAUGUUUUCCUGAUGCCUCUCAUUCCUAUUGUUCUUAGGUGCUCCUUCCUCUUCCUUUUGGCUUGCAUGAUCUGCCUAAGCGAAAACCAUCUAUGUAUUGAUUUGGAUGGCUUCGAUAGUUUUAUAGCGAGUUAGGAAGAGGAAGAAAUUGAGUGUCUAAGAACAGUGGGAAUGGAAACAUUAAGGAAAGCCUACAGUAUUUUCUUCUCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
144
NEP:
52.55%
LE_num:
LEP:
20.07%
ME_num:
MEP:
12.41%
HE_num:
HEP:
14.96%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
pollen
Tau :
0.95
Avg Expression:
175.20
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17 | -1.63143434900767 | 0.00324958443213845 |
| 2 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -3.05645624378121 | 9.85309941153909e-06 |