Chr:
Chr4
Start:
19420175
End:
19420194
Strand:
+
Sequence:
AGGCAGUCUCCUUGGCUAGC
Length:
20
precursor sequence:
UAGCCAAGGAUGACUUGCCUAUUGUGCUCUUCUGAAUGAUGCAGUGCCAUGAUCAGUGUGGCCUGGCUGGUUCAGAUGAGCCGAGAUAGGCAGUCUCCUUGGCUAGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
43
NEP:
15.69%
LE_num:
LEP:
11.31%
ME_num:
MEP:
34.67%
HE_num:
HEP:
38.32%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf_sheath
Tau :
0.84
Avg Expression:
116.74
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(2) | -2.71267620752022 | 0.0028494211523732 |
| 2 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(1) | -1.50433341243816 | 0.0107083712391777 |
| 3 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -3.20605915908727 | 4.7914569965955e-28 |
| 4 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -4.23937381364349 | 2.80964531634823e-31 |
| 5 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_24h | 3.70587856504439 | 0.00343783845655732 |
| 6 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | -1.05299094373463 | 7.11214111631884e-05 |
| 7 | none // leaves // WT, Control--/--none // leaves // DCL1a mutant, Control | 2.00998133180205 | 0.0168692935965872 |