Chr:
Chr4
Start:
13243647
End:
13243672
Strand:
+
Sequence:
ACGGAUGAUUAAAGUUGGACACGG
Length:
24
precursor sequence:
CAUGAGUUUUGUGUCUAACUUUGAUCGUCCGUUUUAUUUUAAAUUUUUUAUGAUUAAUAUUUUUAUUGUUAUUAGAUUAUAAAACACAAAUAGUACUUUAUGUGUGACUUAUGUUCUUUAGUUUUUUCAAAAAAAAUUAAAUAAAACGGAUGAUUAAAGUUGGACACGGAAAUUCAUGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
9
NEP:
3.28%
LE_num:
LEP:
5.11%
ME_num:
MEP:
81.75%
HE_num:
HEP:
9.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seed
Tau :
0.74
Avg Expression:
19.49
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf_sheath // S_bph feeding--/--BPH6-transgenic line // leaf_sheath // R_bph | -1.37983764761882 | 3.30338960383243e-06 |
| 2 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | 1.22579080386842 | 1.14472311986185e-07 |
| 3 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | -1.21240860846459 | 0.000454012100094031 |
| 4 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -1.94573025726571 | 0.0428610019866906 |