Chr:
Chr4
Start:
9137284
End:
9137303
Strand:
-
Sequence:
GCAAGAUAUUGGGUAUUUCU
Length:
20
precursor sequence:
UUCAAAAUAAAAAAAAAAAGAAAUACCCAUAUCUUGCUGAAGCAAGAUAUUGGGUAUUUCUAGCUUUCCUUUCUUCAAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
26
NEP:
9.49%
LE_num:
LEP:
8.76%
ME_num:
MEP:
59.49%
HE_num:
HEP:
22.26%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.85
Avg Expression:
95.35
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -6.72161879632437 | 8.56839288265774e-304 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -7.86223938179711 | 1.3239257956671e-285 |
| 3 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | -5.86745864943148 | 1.22913791067645e-74 |
| 4 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | -5.39631938881251 | 1.49169681931181e-22 |
| 5 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | 6.42700441355969 | 2.61460490164757e-114 |
| 6 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | -1.32417238811322 | 3.77503601690548e-08 |
| 7 | none // leaves // WT, Control--/--none // leaves // DCL1a mutant, Control | -2.33104654079712 | 0.0242413538157904 |
| 8 | Nipponbare // leaves // rice_mock--/--Nipponbare // leaves // rice_RSV | 1.66382664019234 | 0.00365855613126493 |
| 9 | none // leaves // DCL1a mutant, Control--/--none // leaves // DCL1a mutant, M. oryzae Infected | 3.41525920038997 | 0.00943637499429866 |
| 10 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -2.02913280327992 | 0.0172177297843315 |