Chr:
Chr6
Start:
26661423
End:
26661446
Strand:
-
Sequence:
AAUCAAGUUAGGAACCAUGCAAGU
Length:
24
precursor sequence:
AAAGUUGUUUGGCUACUGGUAAUCAAGUUAGGAACCAUGCAAGUUGUUUAUGAGUUGUGCCCUCUGUGCCUAGCGCCAUAGAUGACUUGCAAGAUUUCUAACUUGAGUGCCAGUGUCCAAGUAAUUUUGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
25
NEP:
9.12%
LE_num:
LEP:
8.03%
ME_num:
MEP:
79.2%
HE_num:
HEP:
3.65%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.78
Avg Expression:
9.95
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | 4.95118308875102 | 0.0400124986748826 |
| 2 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | 2.30416391663787 | 1.19649481886359e-17 |
| 3 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -2.2546780740372 | 0.035384427955249 |