Chr:
Chr6
Start:
30327102
End:
30327122
Strand:
-
Sequence:
UCGGACCAGGCUUCAUUCCCC
Length:
21
precursor sequence:
GGAGCCUUUUCAUUUUGAGGGGAAUGUUGUCUGGCUCGGGGCUACUUUUAAUUUCUCUCUCUUUUGAUAUCUUCUUUUCUCGAUCUCCUAGCUUGAUCUUUUGAUCUCUCAAAUCGAUCUUAAGAAAAAGAUCAGUCAAAGAGAUGAGAGUAGAUGUCUGUAGAUCUCGGACCAGGCUUCAUUCCCCCCAAACAGAAGGGCUCCCAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
0
NEP:
0.0%
LE_num:
0
LEP:
0.0%
ME_num:
0
MEP:
0.0%
HE_num:
274
HEP:
100.0%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.69
Avg Expression:
22250.24
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | 1.50849145680348 | 7.18407752819285e-22 |
2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | 1.71816223337368 | 1.70356077177113e-31 |
3 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | 2.78613229436616 | 0 |
4 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | 1.99545704723416 | 1.33929302378168e-15 |
5 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -2.80025148317012 | 2.11828239561203e-256 |
6 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | 1.16962688130173 | 1.03300793349405e-10 |