Chr:
Chr6
Start:
1562044
End:
1562064
Strand:
+
Sequence:
UGCCAAAGGAGAGUUGCCCUG
Length:
21
precursor sequence:
AAGACAGUAGUAGGCAGCUCUCCUCUGGCAGGUGCAUUCUAGGUGAUUUUGUAAUUGUAUAUGCAUCCAAGGUAUAUACAGUCCGGCCAUGGUGCUACAUUGCAAUCAUCCAUAUGUGAUUGCAUUGUGUAUAUAUAUACAUGGUGGCCUUUGAUAGACCAUCAUAUAUCGGUUGGUUAUGUGCAUGUAUGUAUAUACCAGCUGCUACUAGCUUUGAUCGAUCGCCAUGUAGCGAUUGAAUUCACCAAAACGGCCUGCCAAAGGAGAGUUGCCCUGCGACUGUCUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
23
NEP:
8.39%
LE_num:
LEP:
3.65%
ME_num:
MEP:
41.61%
HE_num:
HEP:
46.35%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.77
Avg Expression:
121.90
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB1 // panicle // WT--/--PB1 // panicle // OE_AGO17 | 1.20194290050913 | 1.94472107789519e-06 |
| 2 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(2) | -1.17442139556184 | 1.08988663452032e-09 |
| 3 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -6.661928235555 | 3.36827604294335e-269 |
| 4 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -7.05214746424216 | 1.7586011951198e-266 |
| 5 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | -1.1354355550355 | 0.00103003148313221 |
| 6 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_8h | 1.22048043653809 | 0.000689076102915494 |
| 7 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_24h | 1.25350337495795 | 0.0191759766351969 |
| 8 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h | 1.16678417671222 | 0.0388243237269362 |
| 9 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | -3.97464224429508 | 0.000650707171740446 |