Chr:
Chr6
Start:
13330544
End:
13330569
Strand:
+
Sequence:
AUGGCUCUGAUAUCAUGUUGGUUU
Length:
24
precursor sequence:
UAUCUGUUGUUUCUCUCAAAUCUAACAUGGUAUCGGAUCCAUAGGUGUAGCCAUAUCAAUCUUAAAGCUAUGGCUCUGAUAUCAUGUUGGUUUUGAAGGAAAUGACUGAUAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
4
NEP:
1.46%
LE_num:
LEP:
1.46%
ME_num:
MEP:
40.51%
HE_num:
HEP:
56.57%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.70
Avg Expression:
68.31
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // mature panicle // Wild type--/--PB-1 // mature panicle // ago18(2) | 1.02578922659744 | 0.0299458821024772 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | 1.28550329171989 | 0.0386003643559376 |
| 3 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | 1.58216182112511 | 0.010834460969365 |
| 4 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | 1.19904140508826 | 0.0142040578080431 |
| 5 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -1.07540525506624 | 0.0387616175719654 |