Chr:
Chr6
Start:
27596226
End:
27596249
Strand:
-
Sequence:
ACAGUCAAACGUUGGACACGGAUA
Length:
24
precursor sequence:
AUAAGUACAGUUUUACACUGUUCAUCUCCAACGUUUGACCGUUCGUCUUAUUUGAAAAUAUUUUGUGAUUAGUAUUUUUUUGUCAUUAGAUGAUAAAAUAUAAAUAAUACUUUAUACGUAACUAUUUUUUUAACUUUUUAUAAAUUUUUUAAAUAAAACGGACAGUCAAACGUUGGACACGGAUAUCCACGACUGCGUUUAUUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
3
NEP:
1.09%
LE_num:
LEP:
1.46%
ME_num:
MEP:
87.59%
HE_num:
HEP:
9.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.79
Avg Expression:
14.98
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | -3.90474692090325 | 3.90796130226966e-23 |
| 2 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | 1.11846126663761 | 0.00792389964107045 |