RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miRN2311_PmiREN

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr6

Start:

992257

End:

992278

Strand:

+

Sequence:

UGAUGAUCUUAUGGAUAUGCCU

Length:

22

precursor sequence:

UGGAGCUCACAUUGAUGUUUGCAUAUCUUGUCAUUUGCUUGAUGAUAGUGCUUCUUGUCAUGCUAUAUAUUUUGCAUCAUCUAGCAUAUCUACUUCAUGUGAUGAUCUUAUGGAUAUGCCUAGCUCUAGCUCUGUGCUUCU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

85

NEP:

31.02%

LE_num:

44

LEP:

16.06%

ME_num:

128

MEP:

46.72%

HE_num:

17

HEP:

6.2%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

panicle

Tau :

0.81

Avg Expression:

6.06

Tip: Osa-miRN2311_PmiREN is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late-1.226434978304150.012211131314487