RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miR156h_PmiREN

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr6

Start:

27388145

End:

27388164

Strand:

+

Sequence:

UGACAGAAGAGAGAGAGCAC

Length:

20

precursor sequence:

GUCAAACCCCUUGAACUAGCUGACAGAAGAGAGAGAGCACGCUGAACAUCUAGUGCUCCAUCUAGUUUUGAAGCAGUUUCAGAUGCAUCUGCAC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

74

NEP:

27.01%

LE_num:

59

LEP:

21.53%

ME_num:

119

MEP:

43.43%

HE_num:

22

HEP:

8.03%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

seedling

Tau :

0.83

Avg Expression:

25.00

Tip: Osa-miR156h_PmiREN is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
Tip: Osa-miR156h_PmiREN is not a differential expression ncRNA.