Chr:
Chr6
Start:
27296005
End:
27296025
Strand:
-
Sequence:
CAGCCAAGGAUGACUUGCCGG
Length:
21
precursor sequence:
AUGAGAUAGAGAACGGAAUGCAGCCAAGGAUGACUUGCCGGUACGUGUAUGCAUGUUUCAAGGUACUAUAUGUGCCCCCAACUGUUUUAGAUCCAUGCUGACAUUUUCCGGCAAGUUGUCCUUGGCUACGUCUUGUUCUUUUUCUCUCAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
21
NEP:
7.66%
LE_num:
LEP:
5.84%
ME_num:
MEP:
50.0%
HE_num:
HEP:
36.5%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.89
Avg Expression:
425.88
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -2.7660041414942 | 0.000291652814150372 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -4.06927582400359 | 3.62285049432104e-05 |
| 3 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -3.13352897137068 | 0.00299913064888719 |