Chr:
Chr6
Start:
17008984
End:
17009005
Strand:
-
Sequence:
UUCCUAUAUGAACACUGUUGCC
Length:
22
precursor sequence:
UUUUUUGAGGAAAUUGCUGGCAGCACUGUUUAUAUAGAAAUUUCUGUAAAAUAAUUGCUCCUGAGCUUGUGUUUGUCAUAAAUGUUAGUUGUUACUGUAGAUGUUUCUUUCCUUAAAAGUUUCCCUAAACAUUCUUGCUUGUUUACAGGAAUUCCUAUAUGAACACUGUUGCCAGCAAUUUGCUUUUUAAAUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
65
NEP:
23.72%
LE_num:
LEP:
6.2%
ME_num:
MEP:
50.73%
HE_num:
HEP:
19.34%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.79
Avg Expression:
20.99
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -1.21357296891572 | 0.000109330050041506 |
| 2 | japonica // shoot_base // WT_base--/--japonica // shoot_base // osnrpd1ab_base | 1.34369851116958 | 1.48450019388646e-09 |
| 3 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | -1.32861795075864 | 0.000648193159212596 |
| 4 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -2.88742675905339 | 2.09164831316273e-08 |
| 5 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -2.45417726057927 | 2.51672775228603e-05 |