Osa-miR160b_Both


Function Link


Basic Info

Chr:

Chr6

Start:

28081049

End:

28081069

Strand:

+

Sequence:

UGCCUGGCUCCCUGUAUGCCA

Length:

21

precursor sequence:

UUUUGAUCGGCUUGAGAGCGUGCCUGGCUCCCUGUAUGCCACUCAUGUAGCCCAAUCCAUGGUGUGUUUGGAUGCUGUGGGUGGCGUGCAAGGAGCCAAGCAUGCGUGCCAUGAUCUCUCUUUC


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.36%

LE_num:

1

LEP:

0.36%

ME_num:

97

MEP:

35.4%

HE_num:

175

HEP:

63.87%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

lamina_joint

Tau :

0.87

Avg Expression:

438.87

Tip: Osa-miR160b_Both is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1HT54 // leaves // 45C, 0h--/--HT54 // leaves // 45C, 24h2.819127490659420.000476343594513471
2PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1)-1.291593660011360.000276121711816319
3PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2)-1.224713269976030.00038840001417947
4IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h-2.219165969245770.0430043001049405
5BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_eaR_bphly1.355321512628794.92922954792202e-10