Chr:
Chr6
Start:
17008985
End:
17009005
Strand:
-
Sequence:
UUCCUAUAUGAACACUGUUGC
Length:
21
precursor sequence:
UUUUUGAGGAAAUUGCUGGCAGCACUGUUUAUAUAGAAAUUUCUGUAAAAUAAUUGCUCCUGAGCUUGUGUUUGUCAUAAAUGUUAGUUGUUACUGUAGAUGUUUCUUUCCUUAAAAGUUUCCCUAAACAUUCUUGCUUGUUUACAGGAAUUCCUAUAUGAACACUGUUGCCAGCAAUUUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
70
NEP:
25.55%
LE_num:
LEP:
8.03%
ME_num:
MEP:
51.09%
HE_num:
HEP:
15.33%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.85
Avg Expression:
19.46
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | -1.21672296669937 | 0.000139198611974486 |
| 2 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -3.04110977816936 | 1.74596981387129e-08 |
| 3 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -2.50667789771443 | 1.99229483057016e-05 |