RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

Osa-miR812ad_PmiREN

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr6

Start:

30201985

End:

30202008

Strand:

-

Sequence:

ACGGAAAAUCAUGGCUGCACUUAA

Length:

24

precursor sequence:

UUACUGCUCCGUCCCAUUUUAAAUGUAACCAUAAGUUUUCGUGCUUAUUUUUGAUUGUCCGUUUUAUUUGAAUUUGGUUUAUAAUUAGUAUUUUUAUUGUUAAGAGAAGAUAAAACAUGAAUAAUAUUUUAUAUAUAACUUAUAUUUUUAUUUUUUAAAAAAAAUUUUAAGUAAGAUAGACAAUUAAAGUUGUGUACGGAAAAUCAUGGCUGCACUUAAAAUAUGAUGGAGGGAGUAUC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

23

NEP:

8.39%

LE_num:

38

LEP:

13.87%

ME_num:

190

MEP:

69.34%

HE_num:

23

HEP:

8.39%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

seed

Tau :

0.92

Avg Expression:

28.61

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1PB1 // panicle // WT--/--PB1 // panicle // KD_AGO171.802513258713711.48712508895882e-05