RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

osa-miR1428a-5p_miRbase

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr1

Start:

13160785

End:

13160805

Strand:

+

Sequence:

CGUUUUGCAAAUUCGCAGGCC

Length:

21

precursor sequence:

GGUUAGUGCGUUUUGCAAAUUCGCAGGCCCUAUCUUGUGGUAUGAACUGAGUACGCGAUGAUUUAUCCUGCGUAUUGGGGGCUUACCAUAAGAUAAAGCCGUGAAUUUGCAAAACGUUCA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

163

NEP:

59.49%

LE_num:

52

LEP:

18.98%

ME_num:

59

MEP:

21.53%

HE_num:

0

HEP:

0.0%


Warning: Undefined variable $ncRNA_type in /home/www/html/RiceNCexp/browse_detail_info.php on line 222

Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

lamina_joint

Tau :

0.87

Avg Expression:

3.33

Tip: osa-miR1428a-5p_miRbase is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late5.56690497600710.000651109268632691