Chr:
Chr1
Start:
833970
End:
833989
Strand:
-
Sequence:
CUCGCCGGGGCUGCGUGCCG
Length:
20
precursor sequence:
CCGAGCCUUGCUCGCCGGGGCUGCGUGCCGCCAUAGCUGGUGCGCAUCCCCGUCGAGCGUUGCUCGACG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
117
NEP:
42.7%
LE_num:
LEP:
5.47%
ME_num:
MEP:
44.89%
HE_num:
HEP:
6.93%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.67
Avg Expression:
10.95
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(1) | -5.55020962264226 | 1.13490206552239e-65 |
| 2 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | -6.10016558852788 | 2.5659288154376e-60 |
| 3 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | -5.85993933033149 | 1.01025092754353e-95 |
| 4 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | -5.76130353107041 | 2.61194488548078e-15 |
| 5 | PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17 | 4.51522478357718 | 2.23143710935823e-187 |
| 6 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_24h | -3.17945022621007 | 2.71070991669417e-05 |
| 7 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h | -4.54880093557261 | 8.44761900193338e-13 |
| 8 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_late | 1.2889144591093 | 0.00593915588806536 |
| 9 | Nipponbare // leaf_sheath // S_bph feeding--/--Nipponbare // leaf_sheath // S_bph feeding_early | 1.43967221162242 | 0.000773296966592778 |