RiceNCexp:Browse

miRNAs Basic Information

There are 738 and 699 rice mature miRNAs in miRbase and PmiREN, respectively. We merged the miRNAs of the two databases by name and sequence of the miRNA. After merging, we collected a total of 1228 rice mature miRNAs and used different suffixes to distinguish their sources. The "_Both" suffix indicates that the miRNA comes from both the miRbase and the PmiREN. The "_miRbase" suffix indicates that the miRNA is only from the miRbase, and the "_PmiREN" suffix indicates that the miRNA is only from the PmiREN. In addition, 71 novel miRNAs were predicted by RiceNCexp and suffixed with "_RiceNCexp". Therefore, RiceNCexp contains a total of 1299 rice miRNAs.

Tip: If you want to search for a certain ncRNA in RiceNCexp, please select "all rows per page" to show all entries and retrieve it in the search box.

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Fliter by DE/TSE:

total numbers: 1299

rows per page

Name	Database	Confidence	Chromosome	Start	End	Strand	DE/TSE
osa-miR444a-5p	miRbase		none	none	none	none	Y/Y
Osa-miR444a	miRbase/PmiREN	/	Chr8	20895018	20895040	+	Y/N
osa-miR444a-3p.1	miRbase		none	none	none	none	N/N
Osa-miR528	miRbase/PmiREN	/	Chr3	1667330	1667350	+	Y/N
osa-miR528-3p	miRbase		Chr3	1667395	1667415	+	Y/N
osa-miR529a	miRbase		Chr2	16227884	16227903	+	Y/N
osa-miR530-5p	miRbase		Chr4	8303665	8303684	-	Y/Y
osa-miR530-3p	miRbase		Chr4	8303546	8303566	-	Y/Y
osa-miR531a	miRbase		Chr8	1220398	1220421	-	Y/N
Osa-miR535	miRbase/PmiREN	/	Chr11	16290598	16290618	-	Y/N
osa-miR535-3p	miRbase		Chr11	16290533	16290553	-	Y/N
osa-miR395m	miRbase		Chr4	32622092	32622112	+	Y/N
Osa-miR395n	miRbase/PmiREN	/	Chr4	32622288	32622308	+	Y/N
osa-miR395o	miRbase		Chr4	32622429	32622449	+	N/N
Osa-miR395p	miRbase/PmiREN	/	Chr4	32622572	32622592	+	Y/N
osa-miR395q	miRbase		Chr4	32622715	32622735	+	Y/N
osa-miR395v	miRbase		Chr9	6606575	6606595	-	N/N
osa-miR395w	miRbase		Chr9	6606291	6606312	-	N/N
osa-miR395r	miRbase		none	none	none	none	Y/N
osa-miR810a	miRbase		none	none	none	none	Y/N
osa-miR812a	miRbase		Chr1	33947325	33947346	+	N/N
osa-miR812b	miRbase		Chr2	1936332	1936353	-	N/N
osa-miR812c	miRbase		Chr6	26260440	26260461	+	N/N
osa-miR812d	miRbase		Chr7	22395351	22395372	+	N/N
osa-miR812e	miRbase		Chr8	16401286	16401307	+	N/N
osa-miR814a	miRbase		Chr1	22375048	22375069	+	Y/N
osa-miR814b	miRbase		Chr2	26341222	26341243	+	Y/N
osa-miR814c	miRbase		Chr2	10889722	10889743	-	Y/N
osa-miR815a	miRbase		Chr5	29746690	29746710	+	Y/N
osa-miR815b	miRbase		Chr5	14992306	14992326	+	N/N
osa-miR815c	miRbase		Chr7	5426888	5426908	-	N/N
osa-miR816	miRbase		Chr10	21808335	21808354	+	N/N
osa-miR817	miRbase		Chr2	12276369	12276389	-	N/N
osa-miR818a	miRbase		Chr1	40415538	40415559	+	N/N
osa-miR818b	miRbase		Chr2	4007278	4007299	+	N/N
osa-miR818c	miRbase		Chr2	35928879	35928900	+	N/N
osa-miR818d	miRbase		Chr4	34969181	34969202	-	N/N
osa-miR818e	miRbase		Chr7	28154435	28154456	-	N/N
osa-miR820a	miRbase		Chr1	14130483	14130503	+	Y/N
osa-miR820b	miRbase		Chr7	13120705	13120725	-	Y/N
osa-miR820c	miRbase		Chr10	6928685	6928705	+	Y/N
osa-miR821a	miRbase		Chr3	22974239	22974262	+	N/N
osa-miR821b	miRbase		Chr7	16417245	16417268	+	N/N
osa-miR821c	miRbase		Chr8	19925361	19925384	-	N/N
Osa-miR529b	miRbase/PmiREN	/	Chr4	15883042	15883062	+	Y/Y
osa-miR1423-5p	miRbase		Chr4	19715137	19715160	+	Y/N
osa-miR1423-3p	miRbase		Chr4	19715211	19715231	+	Y/N
osa-miR1424	miRbase		Chr7	26662366	26662386	-	N/N
Osa-miR1425	miRbase/PmiREN	/	Chr5	8862162	8862182	+	Y/N
osa-miR1425-3p	miRbase		Chr5	8862219	8862239	+	Y/N
osa-miR1426	miRbase		Chr1	7189323	7189343	-	N/N
Osa-miR1427	miRbase/PmiREN	/	Chr8	9192766	9192786	+	Y/N
osa-miR1428a-5p	miRbase		Chr1	13160785	13160805	+	Y/N
osa-miR1428a-3p	miRbase		Chr1	13160865	13160885	+	N/N
osa-miR1429-5p	miRbase		Chr8	2037052	2037072	-	N/Y
osa-miR1429-3p	miRbase		Chr8	2036954	2036974	-	Y/N
osa-miR1430	miRbase		Chr12	6825025	6825045	-	Y/Y
Osa-miR1431	miRbase/PmiREN	/	Chr1	4766355	4766375	-	Y/Y
osa-miR1432-5p	miRbase		Chr7	23401784	23401804	-	Y/Y
osa-miR1432-3p	miRbase		Chr7	23401707	23401727	-	Y/Y
osa-miR169r-5p	miRbase		Chr3	35782429	35782449	+	Y/N
osa-miR169r-3p	miRbase		Chr3	35782501	35782521	+	Y/N
osa-miR444b.2	miRbase		none	none	none	none	Y/N
osa-miR444b.1	miRbase		none	none	none	none	Y/N
osa-miR444c.2	miRbase		none	none	none	none	Y/N
osa-miR444c.1	miRbase		none	none	none	none	Y/N
osa-miR444d.3	miRbase		none	none	none	none	Y/N
osa-miR444d.2	miRbase		none	none	none	none	Y/N
osa-miR444d.1	miRbase		none	none	none	none	N/N
Osa-miR444e	miRbase/PmiREN	/	Chr8	20884829	20884851	+	Y/N
osa-miR444f	miRbase		none	none	none	none	N/N
osa-miR810b.1	miRbase		Chr11	959633	959653	-	Y/N
osa-miR810b.2	miRbase		Chr11	959609	959629	-	Y/Y
osa-miR1435	miRbase		Chr1	29289440	29289459	-	N/N
osa-miR1436	miRbase		Chr1	20316606	20316626	-	Y/N
osa-miR1437a	miRbase		Chr8	3956048	3956069	+	Y/N
osa-miR1438	miRbase		Chr10	8429630	8429651	+	N/N
osa-miR1440a	miRbase		Chr9	5980666	5980685	-	N/N
osa-miR1441	miRbase		Chr12	19485761	19485781	-	N/N
osa-miR1442	miRbase		Chr7	27589077	27589096	+	N/N
osa-miR1439	miRbase		Chr12	10074240	10074260	+	N/N
osa-miR531b	miRbase		Chr1	833970	833989	-	Y/N
Osa-miR1846d	miRbase/PmiREN	/	Chr1	39637075	39637096	+	Y/N
osa-miR1846d-3p	miRbase		Chr1	39637151	39637170	+	Y/Y
osa-miR1847.1	miRbase		Chr1	20332894	20332914	+	Y/N
osa-miR1847.2	miRbase		Chr1	20332937	20332960	+	N/N
osa-miR1848	miRbase		Chr4	18131817	18131837	+	N/N
osa-miR1849	miRbase		Chr4	22224878	22224898	+	Y/N
osa-miR1850.1	miRbase		Chr5	26275302	26275322	-	Y/N
osa-miR1850.2	miRbase		Chr5	26275277	26275297	-	Y/N
osa-miR1850.3	miRbase		Chr5	26275246	26275267	-	Y/N
osa-miR1851	miRbase		Chr5	26049753	26049773	+	Y/N
Osa-miR1852	miRbase/PmiREN	/	Chr5	20761126	20761148	+	N/N
osa-miR1853-5p	miRbase		Chr8	3689146	3689169	-	N/N
osa-miR1853-3p	miRbase		Chr8	3689101	3689122	-	N/N
osa-miR1854-5p	miRbase		Chr8	7858443	7858463	-	N/Y
osa-miR1854-3p	miRbase		Chr8	7858374	7858395	-	N/N
osa-miR1855	miRbase		Chr11	21709050	21709070	+	N/N
Osa-miR1856	miRbase/PmiREN	/	Chr11	10376266	10376286	-	Y/Y
osa-miR1857-5p	miRbase		Chr11	2733912	2733932	+	N/N
Osa-miR1857	miRbase/PmiREN	/	Chr11	2734001	2734021	+	N/Y
osa-miR1428b	miRbase		Chr1	25390434	25390454	+	N/N
osa-miR1428c	miRbase		Chr2	2535117	2535137	+	N/N
osa-miR1428d	miRbase		Chr3	23077356	23077376	+	N/N
osa-miR1428e-5p	miRbase		Chr3	23076880	23076901	+	Y/N
Osa-miR1428e	miRbase/PmiREN	/	Chr3	23076951	23076971	+	Y/N
osa-miR1858a	miRbase		Chr9	13536656	13536676	+	Y/N
osa-miR1858b	miRbase		Chr9	13194082	13194102	+	Y/N
osa-miR1846a-5p	miRbase		Chr10	529306	529326	+	Y/N
osa-miR1846a-3p	miRbase		Chr10	529335	529355	+	Y/Y
osa-miR1846b-5p	miRbase		Chr11	27715881	27715901	-	Y/N
Osa-miR1846b	miRbase/PmiREN	/	Chr11	27715852	27715872	-	Y/Y
Osa-miR1859	miRbase/PmiREN	/	Chr1	673288	673309	-	Y/Y
osa-miR1860-5p	miRbase		Chr1	934510	934530	-	N/N
osa-miR1860-3p	miRbase		Chr1	934456	934477	-	N/N
osa-miR1861a	miRbase		Chr1	15049794	15049815	+	Y/N
Osa-miR1861b	miRbase/PmiREN	/	Chr2	20715979	20716000	+	Y/Y
osa-miR1861c	miRbase		Chr2	20716196	20716217	+	Y/N
osa-miR1861d	miRbase		Chr4	6536354	6536375	+	Y/N
osa-miR1861e	miRbase		Chr4	6536571	6536592	+	Y/N
Osa-miR1861f	miRbase/PmiREN	/	Chr5	18668414	18668435	+	Y/Y
osa-miR1861g	miRbase		Chr5	18668633	18668654	+	Y/N
Osa-miR1861h	miRbase/PmiREN	/	Chr6	27238262	27238283	-	Y/Y
Osa-miR1861i	miRbase/PmiREN	/	Chr6	14949513	14949534	+	Y/Y
Osa-miR1861j	miRbase/PmiREN	/	Chr8	15132802	15132823	-	Y/Y
osa-miR1861k	miRbase		Chr8	15132584	15132605	-	Y/N
Osa-miR1861l	miRbase/PmiREN	/	Chr9	13532448	13532469	+	Y/Y
osa-miR1861m	miRbase		Chr9	13532666	13532687	+	Y/N
osa-miR1861n	miRbase		Chr12	16586629	16586650	-	Y/Y
osa-miR1862a	miRbase		Chr1	26192362	26192385	+	Y/N
Osa-miR1862b	miRbase/PmiREN	/	Chr8	8341244	8341267	-	Y/N
Osa-miR1862c	miRbase/PmiREN	/	Chr10	16093939	16093962	+	Y/N
osa-miR1863a	miRbase		Chr2	8522086	8522109	+	N/N
Osa-miR1864	miRbase/PmiREN	/	Chr2	14949079	14949104	-	Y/N
osa-miR1865-5p	miRbase		Chr3	34000604	34000627	+	N/N
osa-miR1865-3p	miRbase		Chr3	34000704	34000727	+	Y/N
Osa-miR1866	miRbase/PmiREN	/	Chr3	6510880	6510903	+	Y/Y
osa-miR1866-3p	miRbase		Chr3	6510921	6510942	+	Y/Y
osa-miR1868	miRbase		Chr4	19715494	19715517	+	Y/Y
Osa-miR812f	miRbase/PmiREN	/	Chr4	13243647	13243672	+	Y/N
osa-miR1869	miRbase		Chr4	21644862	21644885	+	N/N
Osa-miR1870	miRbase/PmiREN	/	Chr6	21164798	21164821	+	N/Y
osa-miR1870-3p	miRbase		Chr6	21164894	21164917	+	Y/Y
Osa-miR1871	miRbase/PmiREN	/	Chr6	13330544	13330569	+	Y/N
osa-miR1872	miRbase		Chr6	4923876	4923899	-	Y/N
osa-miR1873	miRbase		Chr7	12755926	12755949	+	Y/N
osa-miR1874-5p	miRbase		Chr8	8702892	8702915	-	Y/Y
Osa-miR1874	miRbase/PmiREN	/	Chr8	8702823	8702846	-	Y/Y
Osa-miR1875	miRbase/PmiREN	/	Chr9	17567956	17567981	-	Y/N
Osa-miR1862d	miRbase/PmiREN	/	Chr10	4833700	4833723	+	Y/N
Osa-miR1876	miRbase/PmiREN	/	Chr10	4833470	4833493	+	Y/N
Osa-miR1862e	miRbase/PmiREN	/	Chr11	2523291	2523314	+	Y/N
Osa-miR1877	miRbase/PmiREN	/	Chr9	21044089	21044112	+	Y/Y
osa-miR1878	miRbase		Chr9	16555519	16555542	+	Y/N
osa-miR1879	miRbase		Chr10	5635431	5635454	+	Y/N
osa-miR1880	miRbase		Chr11	13959900	13959923	+	Y/N
osa-miR1881	miRbase		Chr12	5725959	5725982	+	Y/N
Osa-miR1882a	miRbase/PmiREN	/	Chr3	18923970	18923993	-	N/N
Osa-miR1882b	miRbase/PmiREN	/	Chr8	9847268	9847293	+	N/N
Osa-miR1882c	miRbase/PmiREN	/	Chr7	9122417	9122440	+	N/N
Osa-miR1882d	miRbase/PmiREN	/	Chr8	18739434	18739457	-	N/N
osa-miR1882e-5p	miRbase		Chr10	10321011	10321034	-	N/N
Osa-miR1882e	miRbase/PmiREN	/	Chr10	10320914	10320937	-	N/Y
Osa-miR1882f	miRbase/PmiREN	/	Chr11	11073503	11073526	+	N/N
Osa-miR1882g	miRbase/PmiREN	/	Chr11	20828629	20828652	+	N/N
Osa-miR1882h	miRbase/PmiREN	/	Chr12	21511554	21511577	+	N/N
Osa-miR812g	miRbase/PmiREN	/	Chr3	5230185	5230208	+	N/N
osa-miR812h	miRbase		Chr3	1164964	1164987	-	Y/N
Osa-miR812i	miRbase/PmiREN	/	Chr7	22152501	22152524	+	Y/N
Osa-miR812j	miRbase/PmiREN	/	Chr8	19806531	19806556	+	Y/N
osa-miR1883a	miRbase		Chr11	13523541	13523564	+	Y/N
osa-miR1883b	miRbase		Chr11	9368076	9368099	-	Y/N
osa-miR1319a	miRbase		Chr11	702144	702167	-	Y/N
Osa-miR1320	miRbase/PmiREN	/	Chr6	5073570	5073590	-	Y/Y
osa-miR1320-3p	miRbase		Chr6	5073521	5073541	-	Y/Y
Osa-miR1846c	miRbase/PmiREN	/	Chr12	270799	270819	+	Y/N
osa-miR1846c-3p	miRbase		Chr12	270828	270848	+	N/N
osa-miR2055	miRbase		Chr9	431438	431458	-	N/N
Osa-miR827	miRbase/PmiREN	/	Chr2	23901168	23901188	-	Y/N
osa-miR1846e	miRbase		Chr9	13211477	13211496	-	Y/N
Osa-miR1428f	miRbase/PmiREN	/	Chr7	5451407	5451428	-	Y/N
Osa-miR1428g	miRbase/PmiREN	/	Chr10	3961379	3961400	+	Y/N
osa-miR2090	miRbase		Chr1	38764364	38764385	-	Y/N
osa-miR2091-5p	miRbase		Chr12	19403429	19403449	-	N/N
osa-miR2091-3p	miRbase		Chr12	19403378	19403399	-	N/N
osa-miR2092-5p	miRbase		Chr12	10116332	10116352	+	Y/N
osa-miR2092-3p	miRbase		Chr12	10116401	10116422	+	Y/N
osa-miR2093-5p	miRbase		Chr5	16056053	16056072	-	N/N
osa-miR2093-3p	miRbase		Chr5	16056034	16056053	-	N/N
osa-miR2094-5p	miRbase		Chr2	29779650	29779670	+	N/N
osa-miR2094-3p	miRbase		Chr2	29779679	29779700	+	Y/N
osa-miR2095-5p	miRbase		Chr10	5931466	5931487	+	Y/N
osa-miR2095-3p	miRbase		Chr10	5931517	5931536	+	N/N
osa-miR2096-5p	miRbase		Chr1	6443398	6443418	+	N/N
osa-miR2096-3p	miRbase		Chr1	6443596	6443616	+	N/N
osa-miR2097-5p	miRbase		Chr1	9055610	9055631	+	N/N
osa-miR2097-3p	miRbase		Chr1	9055748	9055769	+	N/N
osa-miR2098-5p	miRbase		Chr10	18080280	18080299	-	N/N
osa-miR2098-3p	miRbase		Chr10	18080252	18080271	-	Y/N
osa-miR2099-5p	miRbase		Chr1	42570862	42570883	+	N/N