Chr:
Chr11
Start:
13523541
End:
13523564
Strand:
+
Sequence:
ACCUGUGACGGGCCGAGAAUGGAA
Length:
24
precursor sequence:
ACCCGUCACUGGUAUCUAGUCACCUGUGACGGGCCGAGAAUGGAACCCGUCAAAGGGACACCUCUGACGGGUUCCAUUCUCGAUCCGUCACAGGUGACUAGAUGCCUGUGACGGCCCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
10
NEP:
3.65%
LE_num:
LEP:
4.74%
ME_num:
MEP:
50.73%
HE_num:
HEP:
40.88%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.83
Avg Expression:
107.16
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | PB-1 // seedling // Wild type--/--PB-1 // seedling // ago18(2) | 1.35575306877201 | 9.64883406318721e-05 |
| 2 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(1) | 1.35830244553946 | 7.39921272260466e-05 |
| 3 | PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2) | 1.02974872050155 | 0.0386644780818631 |
| 4 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_24h | -1.17182542576535 | 0.0144783180095863 |
| 5 | IR24 // leaves // IR24_0h--/--IR24 // leaves // IR24_Xanthomonas oryzae pv. oryzae_8h | -1.45528342312993 | 0.0102763058880679 |
| 6 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_24h | -1.36214245860961 | 0.00862559327632056 |
| 7 | IRBB5 // leaves // IRBB5_0h--/--IRBB5 // leaves // IRBB5_Xanthomonas oryzae pv. oryzae_8h | -1.55337704487149 | 0.0100378509775472 |
| 8 | BPH6-transgenic line // leaf_sheath // R_bph--/--BPH6-transgenic line // leaf_sheath // R_bph_late | 1.20495725002134 | 5.29148926250798e-05 |
| 9 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA | -1.95765180955893 | 1.50404105426751e-11 |
| 10 | none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA | -1.11235920064252 | 0.00770033358705201 |