| SRR5120079 | leaf_sheath | PC_0 | 221.24 | HC |
| SRR6810106 | panicle | panicle | 14.47 | HC |
| SRR7058097 | leaf | rice_mock | 54.30 | HC |
| SRR771500 | endosperm | Endosperm Cultivar Kitaake KNA | 16.97 | HC |
| SRR12416731 | lamina_joint | sRNA_LJ_S1 | 5.71 | HC |
| SRR7058098 | leaf | rice_RSV | 62.70 | HC |
| SRR2154074 | seed | Nipponbare_seed | 17.09 | HC |
| SRR2154073 | seed | Heukgyeong_seed | 51.24 | HC |
| SRR1061625 | panicle | Heat Stress | 10.55 | HC |
| SRR1061624 | panicle | Normal | 20.70 | HC |
| SRR1612403 | leaf | WT wild type (miRNA) | 20.56 | HC |
| SRR1061622 | flag_leaf | Normal | 18.89 | HC |
| SRR3955345 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 167.67 | HC |
| SRR771498 | endosperm | Endosperm Cultivar Nipponbare NNA | 10.75 | HC |
| SRR9070101 | shoot_base | WT_base | 12.33 | HC |
| SRR6810105 | panicle | panicle | 11.11 | HC |
| SRR5929446 | leaf | "O sativa, IL, adapters: standard" | 126.08 | HC |
| SRR6498702 | leaf | "WT, M. oryzae Infected" | 178.90 | HC |
| SRR6498701 | leaf | "WT, Control" | 231.31 | HC |
| SRR6498700 | leaf | "WT, M. oryzae Infected" | 117.16 | HC |
| SRR5049787 | ovary | floret length/mm: 3.8-4.0 | 29.47 | HC |
| SRR6498698 | leaf | "DCL1a mutant, M. oryzae Infected" | 149.21 | HC |
| SRR12416741 | blade | sRNA_Blade_S1 | 7.02 | HC |
| SRR12416740 | blade | sRNA_Blade_S1 | 16.00 | HC |
| SRR12416743 | blade | sRNA_Blade_S2 | 4.23 | HC |
| SRR12416742 | blade | sRNA_Blade_S2 | 9.78 | HC |
| SRR12416745 | blade | sRNA_Blade_S3 | 13.88 | HC |
| SRR12416744 | blade | sRNA_Blade_S3 | 8.77 | HC |
| SRR12416746 | blade | sRNA_Blade_S4 | 12.68 | HC |
| SRR3955339 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 221.89 | HC |
| SRR3955338 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 242.19 | HC |
| SRR3955337 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 266.35 | HC |
| SRR7058096 | leaf | rice_mock | 92.15 | HC |
| SRR1742988 | endosperm | 4X_En_sRNA | 24.99 | HC |
| SRR1742989 | endosperm | 4X_En_sRNA | 34.94 | HC |
| SRR5049790 | ovary | floret length/mm: 3.1-3.3 | 64.58 | HC |
| SRR3955359 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 115.02 | HC |
| SRR5120084 | leaf_sheath | P15_48 | 164.04 | HC |
| SRR3955358 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 204.84 | HC |
| SRR5120083 | leaf_sheath | P15_6 | 173.27 | HC |
| SRR5049792 | ovary | floret length/mm: 6.0-6.5 | 44.01 | HC |
| SRR5120082 | leaf_sheath | P15_0 | 171.41 | HC |
| SRR2154075 | seed | Taipei309_seed | 26.36 | HC |
| SRR3955348 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 106.09 | HC |
| SRR3955349 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 322.65 | HC |
| SRR9070100 | shoot_base | WT_base | 15.58 | HC |
| SRR3955342 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 109.55 | HC |
| SRR3955343 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 187.11 | HC |
| SRR3955340 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 187.83 | HC |
| SRR3955341 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 121.00 | HC |
| SRR3955347 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 82.31 | HC |
| SRR1742996 | endosperm | 4X2_En_sRNA | 6.99 | HC |
| SRR1742995 | endosperm | 4X2_En_sRNA | 6.47 | HC |
| SRR1742994 | endosperm | 4X2_En_sRNA | 6.60 | HC |
| SRR1742993 | endosperm | 2X4_En_sRNA | 5.15 | HC |
| SRR1742992 | endosperm | 2X4_En_sRNA | 10.25 | HC |
| SRR1742991 | endosperm | 2X4_En_sRNA | 8.91 | HC |
| SRR1742990 | endosperm | 4X_En_sRNA | 27.46 | HC |
| SRR2862367 | leaf | viruliferous Infected leaf cells | 37.76 | HC |
| SRR8649147 | panicle | panicle tissue | 86.24 | HC |
| SRR10704059 | leaf | Glyphosate | 18.30 | HC |
| SRR3955354 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 103.50 | HC |
| SRR9070102 | shoot_base | WT_base | 12.73 | HC |
| SRR6498699 | leaf | "WT, Control" | 233.79 | HC |
| SRR3955350 | panicle | "0.5-1.0 cm panicles, long-day growth conditions" | 171.96 | HC |
| SRR2646852 | panicle | FP | 132.87 | HC |
| SRR2646853 | panicle | FP | 159.10 | HC |
| SRR3955353 | panicle | "3.0-4.0 mm florets, long-day growth conditions" | 276.98 | HC |
| SRR3955352 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 172.86 | HC |
| SRR2646854 | panicle | SP | 260.67 | HC |
| SRR2646855 | panicle | SP | 188.87 | HC |
| SRR5049786 | ovary | floret length/mm: 2.6-2.8 | 31.44 | HC |
| SRR5049785 | anther | floret length/mm: >7.0 | 11.17 | HC |
| SRR6365692 | panicle | Wild type | 19.17 | HC |
| SRR6365693 | panicle | Wild type | 18.36 | HC |
| SRR6365694 | panicle | Wild type | 16.37 | HC |
| SRR5929445 | leaf | "O sativa, IL, adapters: standard" | 138.92 | HC |
| SRR5049788 | ovary | floret length/mm: 5.0-5.5 | 28.47 | HC |
| SRR5049789 | ovary | floret length/mm: >6.5 | 4.60 | HC |
| SRR6810101 | seedling | seedling | 32.33 | HC |
| SRR5049781 | anther | floret length/mm: >6.5 | 38.80 | HC |
| SRR6365691 | panicle | Wild type | 17.02 | HC |
| SRR12416730 | lamina_joint | sRNA_LJ_S1 | 20.20 | HC |
| SRR12416732 | lamina_joint | sRNA_LJ_S2 | 16.32 | HC |
| SRR12416733 | lamina_joint | sRNA_LJ_S2 | 24.65 | HC |
| SRR12416734 | lamina_joint | sRNA_LJ_S3 | 8.94 | HC |
| SRR12416736 | lamina_joint | sRNA_LJ_S4 | 8.69 | HC |
| SRR3955360 | panicle | "3.0-4.0 mm florets, short-day growth conditions" | 97.70 | HC |
| SRR1061616 | panicle | Normal | 5.68 | HC |
| SRR5049793 | ovary | floret length/mm: >7.0 | 7.64 | HC |
| SRR3955355 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 179.27 | HC |
| SRR1061619 | flag_leaf | Heat Stress | 17.60 | HC |
| SRR3955346 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 243.03 | HC |
| SRR2544788 | embryo | 24 hours imbibition | 92.34 | HC |
| SRR3955344 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 194.66 | HC |
| SRR2544787 | embryo | 12 hours imbibition | 62.95 | HC |
| SRR2544786 | embryo | dry seed | 52.48 | HC |
| SRR3955357 | panicle | "1.0-2.0 cm panicles, short-day growth conditions" | 176.48 | HC |
| SRR6810102 | seedling | seedling | 41.51 | HC |
| SRR10956502 | panicle | WT | 79.01 | HC |
| SRR2862368 | leaf | viruliferous Infected leaf cells | 19.33 | HC |
| SRR10956501 | panicle | WT | 75.49 | HC |
| SRR12416735 | lamina_joint | sRNA_LJ_S3 | 18.28 | HC |
| SRR1740023 | seedling | IR64-Control | 26.86 | HC |
| SRR1740024 | seedling | N22-Control | 75.20 | HC |
| SRR5120081 | leaf_sheath | PC_48 | 132.54 | HC |
| SRR5120080 | leaf_sheath | PC_6 | 207.80 | HC |
| SRR3955356 | panicle | "0.5-1.0 cm panicles, short-day growth conditions" | 193.40 | HC |
| SRR3955351 | panicle | "1.0-2.0 cm panicles, long-day growth conditions" | 701.22 | HC |
| SRR5049791 | ovary | floret length/mm: 4.3-4.5 | 64.30 | HC |
| SRR771499 | embryo | Embryo Cultivar Kitaake NEA | 5.72 | HC |
| SRR771501 | embryo | Embryo Cultivar Kitaake KEA | 15.82 | HC |