RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

osa-miR2092-3p_miRbase

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr12

Start:

10116401

End:

10116422

Strand:

+

Sequence:

ACCAGCAUUCCAUUGGCAGAGG

Length:

22

precursor sequence:

UUGAUCUCCCAACUGAAGUCGGUGUUUACUCCCACAAGAUGAUACACUACUAGUCCACCCUUAUCAAUUGUAGUACACACCAGCAUUCCAUUGGCAGAGGUGU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

227

NEP:

82.85%

LE_num:

27

LEP:

9.85%

ME_num:

17

MEP:

6.2%

HE_num:

3

HEP:

1.09%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

endosperm

Tau :

0.97

Avg Expression:

2.86

Tip: osa-miR2092-3p_miRbase is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1none // endosperm // 4X_En_sRNA--/--none // endosperm // 4X2_En_sRNA-4.591878534200220.0295052779450672
2none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA2.865962396044040.000821919789249841