RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

osa-miR444c.1_miRbase

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

none

Start:

none

End:

none

Strand:

none

Sequence:

UGUUGUCUCAAGCUUGCUGCC

Length:

21

precursor sequence:

AGUUGCUGCAAGUGGAGGCGGCAAGCUAGAGACAGCAACUGCAUAUCUUGCAAGAAAAUCGGUUUUAUGGCCAUACCGAUGAUUUUCUUGCAAGCUGUGCAGUUGUUGUCUCAAGCUUGCUGCCUCCCUUUGCCAGAA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

2

NEP:

0.73%

LE_num:

0

LEP:

0.0%

ME_num:

13

MEP:

4.74%

HE_num:

259

HEP:

94.53%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

blade

Tau :

0.83

Avg Expression:

1979.40

Tip: osa-miR444c.1_miRbase is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1PB-1 // young panicle // Wild type--/--PB-1 // young panicle // ago18(2)1.080947338082110.0011907354643794
2PB1 // panicle // WT--/--PB1 // panicle // KD_AGO17-1.469362108649941.81974387326074e-14