RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

osa-miR2094-3p_miRbase

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

29779679

End:

29779700

Strand:

+

Sequence:

CAGAGCUGUGGCAUCCACGUCG

Length:

22

precursor sequence:

UCGGGAGAAGUGUGGCUGCUAGGCUCCUGGGUGCAACCACACAGAGCUGUGGCAUCCACGUCGAGCGAUGGC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

221

NEP:

80.66%

LE_num:

25

LEP:

9.12%

ME_num:

24

MEP:

8.76%

HE_num:

4

HEP:

1.46%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

ovary

Tau :

0.98

Avg Expression:

3.50

Tip: osa-miR2094-3p_miRbase is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1none // endosperm // 4X_En_sRNA--/--none // endosperm // 2X4_En_sRNA5.306921512724420.0027013414506379